Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1427 ATGAACCCCTTGGATTTTACCGAAAACGATGCTTCTGGACTCCAACCTTATGAGCAATTTGAGCGTCTAGAATACGAAGCTTTGGCTGAGAAAAAGAGAAAAGCACTTTCACAATGCCAATTTGAAGGGTTGGCAAAGAAGGCCAGGCATGAAGATGATTCTCAGGCAATATTTGATGAAATAATGGAAACAATGAACCATCGCCGTCGAAGAAAGTCAAGGAAGCGTAAGAAATCAGGTAGACGAAAGGGATTGAAGAATAAACTTAGCCCTGAAGTCACAAGAAAGCTGGGTGAAGCTAATCTTCATTATGCTCATGGTCGTTATGAAGAGGCTATACTTGTTTTGAAAGAAGTGGTTCGGTTGGCTCCAAATTTACCTGATGCATATCACACATTTGGACTTGTCTATAATGCATTTGGAGATAAAAAAAGGGCCTTGAACTTCTACATGCTTGCTGCACATTTGACACCAAAAGATTCATCCCTCTGGAAACTGCTTGTTACCTGGTCCATAGAGCAAGGAAATACTGGTCAAGCTAGGTACTGCCTTTCAAAAGCAATAACAGCAGATCCTGAAGATATATCACTCAGGTTCCATCGTGCCTCACTCTATGTTGAGCTTGGAGAGTATCAGAAAGCTGCTGAGTCATATGAACAAATATCACAACTCTTTCCTGAGAATGTTGAAGCACCAAAGACAGGGGCAAAGCTTTACAAAAAATGTGGTCAGGTTGAACGTTCTGTCAGCATTCTGGAGGACTATATTAAAGATCATCCAACTAAAGCTGATTTAAGCATTGTTGATATGCTAGCTGCTGTATGCATGGAAAATAATGTGCATGATAGAGCTCTTCAGCACATTGAGCATGCACAATTGCTTTACTGTTCTGGGAAAGACTTGCCACTGCATCTAACAATCAAAGCAGGAATTTGCCACATTCATCTTGGAAATATTGAAAAGGCAGAGGTTGTTACATCTTTATTATAA 990 0.403 MNPLDFTENDASGLQPYEQFERLEYEALAEKKRKALSQCQFEGLAKKARHEDDSQAIFDEIMETMNHRRRRKSRKRKKSGRRKGLKNKLSPEVTRKLGEANLHYAHGRYEEAILVLKEVVRLAPNLPDAYHTFGLVYNAFGDKKRALNFYMLAAHLTPKDSSLWKLLVTWSIEQGNTGQARYCLSKAITADPEDISLRFHRASLYVELGEYQKAAESYEQISQLFPENVEAPKTGAKLYKKCGQVERSVSILEDYIKDHPTKADLSIVDMLAAVCMENNVHDRALQHIEHAQLLYCSGKDLPLHLTIKAGICHIHLGNIEKAEVVTSLL* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1427 329 ProSiteProfiles TPR repeat profile. 195 228 IPR019734 GO:0005515
Vvi19g1427 329 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 9 326 IPR039340 GO:0006383
Vvi19g1427 329 SUPERFAMILY TPR-like 99 262 IPR011990 GO:0005515
Vvi19g1427 329 Gene3D Tetratricopeptide repeat domain 11 325 IPR011990 GO:0005515
Vvi19g1427 329 MobiDBLite consensus disorder prediction 68 84 - -
Vvi19g1427 329 MobiDBLite consensus disorder prediction 63 92 - -
Vvi19g1427 329 FunFam General transcription factor 3C polypeptide 3 isoform A 57 301 - -
Vvi19g1427 329 Pfam TPR repeat 101 137 - -
Vvi19g1427 329 ProSiteProfiles TPR repeat profile. 127 160 IPR019734 GO:0005515
Vvi19g1427 329 SMART tpr_5 161 194 IPR019734 GO:0005515
Vvi19g1427 329 SMART tpr_5 195 228 IPR019734 GO:0005515
Vvi19g1427 329 SMART tpr_5 93 126 IPR019734 GO:0005515
Vvi19g1427 329 SMART tpr_5 127 160 IPR019734 GO:0005515
Vvi19g1427 329 Pfam Tetratricopeptide repeat 172 226 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1427 107 275 Glycosyltransferase AT3G04240 24.561 4.07e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1427 K15201 - vvi:100257006 631.328