Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1423 ATGGGGCAGCCATCGGTGCCACCACCTCTAACACCGCCGGCGCCACCGCTGATGGGAGGCGGAGGTGGTGGAGGATGCCAAGTCCGGTGCGCGGGATGCCGCATGATCTTGACGGTGGGAGCCGGGCTGACGGAGTTCGTGTGCCCTACGTGCCAATTGCCGCAGATGTTGCCGCCAGAGCTGGTGAGCAGAACCCACCTCCCGCCGGTGCCGGCTCACGGCATCGATCCTACCAAGATCCAGCTTCCCTGCGCTCACTGCAAGGCGATACTTAATGTTCCGCATGGTCTCTCTAGGTTTGCATGTCCGCAGTGTGGGATTGACCTCGCCGTCGATGTTTCTAAGCTCAAGCAGTTCTTCCCTCCACGCCCTCCTCCCGAGGAAGTGAATGAGGTCTCCGTTACTCTCTTTCTCTGTTTAATTTGTTGCCTTTGGAACTCCCTAACGCGGTGTTTGATTGCCTTGGTTGCCTATAAATCATATAAAATGAAATACAATTTGGAATTATGGTTTAGGGCTATTGAATTTTGCATCTTATGGCATGAACTTCATTGGCAACATTTCACTGATACCTGTCAGGTAGCCATTGAAGTGGAGCGAGAAGAAGATGAAGGTGGTATGGTGGGAGAAACATTTACAGACTATCGCCCTCCCAAACTGTCTATTGGTCCTCCTCACCCGGATCATGTTGTTGAGACGTCTTCTTTATCTGCAGTGCAGCCACCGGAACCCACATATGATCTCAAAATCAAGGATGATCTGGAAAGTTCAAATGCCTTGTCATGCTTGCAAATTGAGACATTGGTCTATGCTTGTCAGAGACATCTTCATCACCTTCAGAGTGGTGCTAGAGCAGGATTCTTTATTGGAGATGGGGCTGGTGTGGGTAAAGGTCGAACAATTGCAGGGTTAATATGGGAGAATTGGCACCATGGGATGAGGAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCAAGAAGGGACTTGGATGACGTGGGTGCAACATCTGTTGAAGTGCATGCTTTGAATAAGCTGCCTTATTCTAAGCTTGATTCAAAGTCTGTGGGAGTCAGGGAGGGAGTTGTTTTCTTGACCTATAGCAGTCTTATAGCATCTTCCGAAAAGGGTCGCTCTCGTCTGCAGCAACTTGTGCAGTGGTGTGGATCAGGATATGATGGACTTGTTATATTTGATGAGTGCCACAAAGCTAAGAATTTGGTACCTGAAGCTGGAGGGCAGCCAACACGAACAGGAGAGGCAGTTCTTGAACTCCAGGCTGGGGTGACCCCGATAGAAGTTGCAGCGGGTGAGATGGATAAGGAAGAGGGATCATGTCTTGGCTTGGTTTTGAGGGCAAAGGCTCGACTTCCTGATGCTCGTGTCATTTACTGCTCAGCAACTGGTGCCTCTGAACCACGCAACATGGGTTATATGATCCGGCTAGGTCTTTGGGGAGCTGGAACTTGTTTCTCTAATTTTCGGGAGTTTCTAGGTGCTCTAGATAAAGGGGGTGTTGGGGCACTGGAACTTGTTGCCATGGACATGAAAGCAAGGGGTATGTATGTCTGTCGTACACTTAGCTATAAAGGGGCAGAGTTTGAAACTGTTGAAGCACCATTGGAAGGCCAGATGACGGAAATGTATAAAAGAGCAGCAGAGTTTTGGGCAGAGTTGCGGGTGGAGTTGCTATCAGCTAGTGCCTTTCTTACTGATGAGAAGCCTAATTCTAGTCAGGTGTGGCGGGTATACTGGGCAAGCCATCAGCGTTTCTTTAGACACATGTGTATGTCAGCTAAGGTGCCTGCTGCTGTAAGGCTATCTAAGCAAGCTTTGATGGAAAATAAGTGTGTGGTCATTGGCCTCCAGAGTACTGGAGAGGCAAGAACAGAGGAAGCAGTCACCAAATATGGTCTTGAACTTGATGATTTTATCTCGGGACCTCGTGAGCTGTTGTTAAAATTTGTGGAAGAAAATTATCCTTTGCCTGAAAAGCCTGAATCACTCCCAGGAGAGGAAAGTGTAAAGGAGCTTCAAAGAAAGAGGCACTCAGCAACACCTGGTGTTTCCCTTAAAGGGAGAGTTAGAAAAGTCGCCAAATGGAAACCTGCAAGTGATGGTGAAAGTGATGAAGATTTTGAACCTGATTCTGAACATGAATCTACTGAATCTGATGATGAATTTCAGATTTGTGAGATTTGCAATACTGAAGAGGAACGGAAGAAATTGCTCCAATGTTCCTGTTGCGCCCAACTAGTCCACCCATCATGTTTGGTCCCACCTATGATTGAGTTAGTATCTGAGGAATGGTCATGCCACTTGTGCAAGGAAAAAACTGATGAATATCTTCAAGCAAGACATGCCTATGTAGCCGAACTGTTGAAGAGGTATGAAGCAGCCATGGAGCGTAAGTCTAAGATTTTGGAGATAATTCGTTCTTTGGATCTTCCAAACAACCCCTTGGATGATATTATTGACCAGCTTGGAGGTCCAGATAATGTTGCAGAAATGACAGGGAGGCGAGGCATGCTTGTGAGGGCCTCAACTGGAAAAGGTGTTACTTATCAGGCACGAAACACAAAGGAGGTGACTATGGAAATGGTCAATATGAATGAGAAGCAACTCTTCATGGATGGTAAAAAGTTTGTTGCTATCATATCCGAAGCTGGATCAGCTGGTGTTTCTTTGCAGGCAGATAGAAGAGCAGTAAATCAGAGAAGAAGGGTTCATTTGACTCTAGAGCTTCCCTGGAGTGCTGACCGAGCAATTCAACAGTTTGGAAGAACTCATAGATCAAATCAAGCTTCTGCACCTGAATACAGGCTACTCTTTACCAATTTAGGTGGTGAACGCCGCTTTGCTTCTATTGTTGCAAAGAGATTAGAAACCTTAGGGGCCTTAACACAAGGAGATCGCCGGGCAGGTCCATCATTGAGTGCTTACAACTATGATAGTGCCTATGGAAAAAGGGCCCTGATGGCGATGTATAGAGGAATCATGGAGCAGGATTCTCTGCCAGTTGTACCTCCAGGATGTTCATCTGAAAAACCAGAGACAATCCAAGAGTTTATTATGAAGGCAAAAGCTGCTCTAGTGTCTGTAGGAATAGTTAGAGACTCAGTTCTAGGTAACGGGAAGGATTCTGGAAAGTTGTCTGGCCGTATAGTTGATTCAGACATGCATGATGTTGGACGTTTTCTCAATCGACTCTTAGGATTGCCACCTGATATCCAGAATAGGCTCTTTGAGTTATTCGTCAGCATCCTTGATCTTCTAGTTCAGAATGCACGTACTGAAGGGCATTTTGACTCGGGGATTGTTGACATGAAAGCTAATGTTATTGAACTACAAGGAACACCAAAGACTGTTCATATTGATCCAATGTCTGGGGCATCTACTGTAATGTTTACTTTCACTATGGATCGTGGAATCACATGGGAGTCTGCAACTACTTTGCTTGATGAGAAGCAAAAAGATGGACTTGGTTCAGCCAGTGATGGATTTTATGAATCTAAGAGGGAATGGTTGGGAAGACGACACTTTCTTTTAGCATTTGAAGGTTCTGCTTCTGGAATGTTTAAGATGGTTCGTCCTGCGGTTGGGGAGGCACTAAGGGAAATGCCTCTAGCAGAACTTAAAAGCAAGTACAGAAGAGTTTCTTCCTTGGAGAAGGCTCGTAGTGGTTGGGAAAATGAATATGAAGTTTCATCTAAACAGTGCATGCATGGCCCCAATTGTAAGCTTGGTAACTTCTGTACGGTTGGTAGAAGGCTACAGGAAGTAAATGTTTTGGGTGGCCTCATTCTTCCGATTTGGGGAACTATTGAGAAGGCACTTTCTAAGCAGGTAATCTGA 3864 0.4601 MGQPSVPPPLTPPAPPLMGGGGGGGCQVRCAGCRMILTVGAGLTEFVCPTCQLPQMLPPELVSRTHLPPVPAHGIDPTKIQLPCAHCKAILNVPHGLSRFACPQCGIDLAVDVSKLKQFFPPRPPPEEVNEVSVTLFLCLICCLWNSLTRCLIALVAYKSYKMKYNLELWFRAIEFCILWHELHWQHFTDTCQVAIEVEREEDEGGMVGETFTDYRPPKLSIGPPHPDHVVETSSLSAVQPPEPTYDLKIKDDLESSNALSCLQIETLVYACQRHLHHLQSGARAGFFIGDGAGVGKGRTIAGLIWENWHHGMRKALWISVGSDLKFDARRDLDDVGATSVEVHALNKLPYSKLDSKSVGVREGVVFLTYSSLIASSEKGRSRLQQLVQWCGSGYDGLVIFDECHKAKNLVPEAGGQPTRTGEAVLELQAGVTPIEVAAGEMDKEEGSCLGLVLRAKARLPDARVIYCSATGASEPRNMGYMIRLGLWGAGTCFSNFREFLGALDKGGVGALELVAMDMKARGMYVCRTLSYKGAEFETVEAPLEGQMTEMYKRAAEFWAELRVELLSASAFLTDEKPNSSQVWRVYWASHQRFFRHMCMSAKVPAAVRLSKQALMENKCVVIGLQSTGEARTEEAVTKYGLELDDFISGPRELLLKFVEENYPLPEKPESLPGEESVKELQRKRHSATPGVSLKGRVRKVAKWKPASDGESDEDFEPDSEHESTESDDEFQICEICNTEEERKKLLQCSCCAQLVHPSCLVPPMIELVSEEWSCHLCKEKTDEYLQARHAYVAELLKRYEAAMERKSKILEIIRSLDLPNNPLDDIIDQLGGPDNVAEMTGRRGMLVRASTGKGVTYQARNTKEVTMEMVNMNEKQLFMDGKKFVAIISEAGSAGVSLQADRRAVNQRRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLETLGALTQGDRRAGPSLSAYNYDSAYGKRALMAMYRGIMEQDSLPVVPPGCSSEKPETIQEFIMKAKAALVSVGIVRDSVLGNGKDSGKLSGRIVDSDMHDVGRFLNRLLGLPPDIQNRLFELFVSILDLLVQNARTEGHFDSGIVDMKANVIELQGTPKTVHIDPMSGASTVMFTFTMDRGITWESATTLLDEKQKDGLGSASDGFYESKREWLGRRHFLLAFEGSASGMFKMVRPAVGEALREMPLAELKSKYRRVSSLEKARSGWENEYEVSSKQCMHGPNCKLGNFCTVGRRLQEVNVLGGLILPIWGTIEKALSKQVI* 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1423 1287 Pfam C-terminal domain on Strawberry notch homologue 822 1111 IPR026937 -
Vvi19g1423 1287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 684 792 IPR013083 -
Vvi19g1423 1287 MobiDBLite consensus disorder prediction 666 727 - -
Vvi19g1423 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 496 IPR027417 -
Vvi19g1423 1287 MobiDBLite consensus disorder prediction 712 727 - -
Vvi19g1423 1287 Pfam PHD-finger 733 781 IPR019787 -
Vvi19g1423 1287 PANTHER STRAWBERRY NOTCH-RELATED 29 1284 IPR026741 GO:0006355
Vvi19g1423 1287 ProSiteProfiles Zinc finger PHD-type profile. 731 781 IPR019787 -
Vvi19g1423 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 877 982 IPR027417 -
Vvi19g1423 1287 Gene3D - 257 475 IPR027417 -
Vvi19g1423 1287 MobiDBLite consensus disorder prediction 672 686 - -
Vvi19g1423 1287 Pfam P-loop containing NTP hydrolase pore-1 225 553 IPR039187 -
Vvi19g1423 1287 SMART PHD_3 733 779 IPR001965 -
Vvi19g1423 1287 SUPERFAMILY FYVE/PHD zinc finger 722 785 IPR011011 -
Vvi19g1423 1287 ProSitePatterns Zinc finger PHD-type signature. 734 778 IPR019786 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vvi19g1423 AAA_34 1e-126 CL0023