Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1421 ATGAGCTTTGAAGTTGGCAAGCTAGTCAGTGGTTACTCTTACTGCACATTCTATGTCAGTATGTGTGTGCCAAAGGTTACAAATGCATTGAGGGAGTCAGGTTTGGAATCATCAAATCTTATTATTGGAATCGATTTCACTAAAAGCAATGAATGGACAGGCAAAGCCTCATTCAATAATCGGAGTTTGCATGCCATTGGTGATACGCCTAATCCATATGAAAAGGCCATTTCTATTATTGGGAAGACTTTGGCTCCTTTCGACGAGGATAACTTAATTCCTTGTTTTGGCTTTGGTGATGCTACCACCCATGATAGCGAGGTGTTCAGCTTCCATGATGATCGTTCACCTTGCCATGGCTTTGAAGAAGTTTTGGCCTGCTATAAAAGGATAGTTCCAAACTTGCAGCTGTCAGGGCCAACTTCTTACGCCCCAGTAGTTGAGGCTGCCATAGATATTGTGGAGAAAAGTGGTGGACAATATCATGTTTTGGTTATCATTGCAGATGGCCAGGTTACAAGAAGCGTCAATGCAAACGATAAGGAACTCAGTCCACAGGAAGAGAAAACAATCAACTCAATAGTTACTGCAAGTTCGTATCCTCTATCCATCATTCTTGTTGGGGTTGGCGATGGGCCCTGGGATGACATGAAGAAATTTGATGACAAGATCCCTGCCCGTGGATTTGATAATTTTCAGTTTGTCAACTTCACTGCAATTATGTCGAAAAATGCAAGTCCCTCAGAGAAAGAAACAGCTTTTGCTCTTGCTGCTCTTATGGAGATCCCCATCCAGTACAAAGCAACTGTTGAATTTGGTATTCTCGGACGGGTAACCGGGAAAGCAAAGAAGGTGGTTCCACGCCCTCCTCCAGCTTCCTACGCTCGCCATGCACCTCCACCTTACGCAATGCCTTATGGAATGCCATCTCATCAGCCAAGCAACCTCTCATCACGCATGCCATCTCGTATGCCATCTCGTCAGCTAAGCAATACACGAGATGAAGGAAACCAGGCCTGCCCAATTTGCCTGACCAGTGTAAAGGACATGGCCTTTGGCTGTGGGCACATGACTTGCAGAGAATGTGCTTCAAAAGTGTCAAACTGCCCCATATGTCGGGAGCCCATCAGAAACCGCCTCAGGGTATACACCGGGTGA 1158 0.456 MSFEVGKLVSGYSYCTFYVSMCVPKVTNALRESGLESSNLIIGIDFTKSNEWTGKASFNNRSLHAIGDTPNPYEKAISIIGKTLAPFDEDNLIPCFGFGDATTHDSEVFSFHDDRSPCHGFEEVLACYKRIVPNLQLSGPTSYAPVVEAAIDIVEKSGGQYHVLVIIADGQVTRSVNANDKELSPQEEKTINSIVTASSYPLSIILVGVGDGPWDDMKKFDDKIPARGFDNFQFVNFTAIMSKNASPSEKETAFALAALMEIPIQYKATVEFGILGRVTGKAKKVVPRPPPASYARHAPPPYAMPYGMPSHQPSNLSSRMPSRMPSRQLSNTRDEGNQACPICLTSVKDMAFGCGHMTCRECASKVSNCPICREPIRNRLRVYTG* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1421 385 Pfam Copine 62 273 IPR010734 -
Vvi19g1421 385 Pfam Zinc finger, C3HC4 type (RING finger) 338 377 - -
Vvi19g1421 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 384 IPR013083 -
Vvi19g1421 385 SMART VWA_4 37 242 IPR002035 -
Vvi19g1421 385 SMART ring_2 340 372 IPR001841 -
Vvi19g1421 385 PANTHER COPINE FAMILY PROTEIN 1 24 361 - -
Vvi19g1421 385 MobiDBLite consensus disorder prediction 303 335 - -
Vvi19g1421 385 MobiDBLite consensus disorder prediction 310 335 - -
Vvi19g1421 385 SUPERFAMILY vWA-like 38 220 IPR036465 -
Vvi19g1421 385 SUPERFAMILY RING/U-box 323 378 - -
Vvi19g1421 385 ProSiteProfiles Zinc finger RING-type profile. 340 373 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1421 Vvi-Chr19 23509116 23515147 Transposed