Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1413 ATGGCCAATGCAACCCCCTTGCTCTCCCAATCTGAGTTATCTCAGCCTCTTTCACCATCTAGTTCGATAGAGTCTGAAACGCCAAGCGTTGAGAAAGTGCTTCCTTCCCTCGATGAGTTCATCGAGCAAAGCATAGGAGGCTTTGCATGGGCACAGTTGCTACATGCCATCCTTGTATCTTTGGCATGGTTGTTTGATGGGCAACAAACATTCATCTCCATCTTCACTGACGCGGAGCCAACATGGCACTGCAATCATCTCAGTACTGAGGATTGCAACTCAGGTTCCAACATTTGCCTACTGCCCAAGACCGCATGGGAGTGGGACAAGCCTGCATACACATTTTTCATATCAGAATGGTCGCTTGAATGCGTCAATTCGATCATCAAAGGCCTGCCTGCTACCTCTTTCTTCATGGGGTGCTTGCTTGGTGGATTTCTTCTAGCTCCAGTGGCGGACTCATCATTTGGCCGTAAGAACATGCTATTCCTCTCATGTCTCACTATGTCTGTCGCAGCGCTTTTAACTGTCTTCTCTACCAACATTTGGATGTACTCAGCATTAAGATTTATCAGTGGTTTTGGGAGGGCATCAATTGGAGCTTCCGCCCTTGTGTTATCAACAGAAACAGTTGGAAATGCTTGGCGTGGCCAAGTGGGGACCATCGGCTTTCTCTGTTGCACCCTAGGGTTTCTGTCATTGCCAGCTATGGCTTATATGAATAGGAGCTCCTCATGGAGACTTCTCTACGTATGGACTTCCATTCCAGCAATTTTCTACTGCCTTTTAATCCGTTTCCTAGTCTGCGAGTCTCCAAGATGGCTTTTCATGCAAGGGCGGAAAGAAGAAGCATTAGCAACACTGGAAAAACTAGCACCCATGGAGAATAATACAAGTTTAAAGTCTTTAGACTTGTGTCTATCAGGGGCATTGCTCAAACAGGAAAAGATGAAGATGAATCTTCATTTATCAATCAAGATGTTGCTGGAGAAAAGATGGGCTTCTCGAAGATTACTTGCAGTTATGGTAATTGCATTTGGGATTGGAATTATGTACTATGGCATGCCATTGGGGGTCGGAAACTTAGCATACAATCTCTATTTGAGTGTGACGCTTAACGTCTTGGCTGAGATGCCCTCATCATTGATCACCATGTTCTATATAGGTAAATGGAGCAGGAGAAGCTCAGTGCTGGCTTTGACCACCATCAGTGGGGTGTCTAGTATAATGTGTGTGGTGGTAGGCCATGGAATGAAGGAATTGCAGGTGGGGCTGGAGCTGATATCCTTCTTCTGCGCCTGCACCGTCTTCTCTGTGTTAATGATATACACACTTGAACTGTTCCCAACTTGTGTGAGGAGCTTGGCGGTAGCCATGGTGAGGCAAGCGCTCATGTCCAGCGGCACGGTCAGTACAATATTGATTGCTGCGGGGAAGACGAATGCGTTTTTGTCCTATGGAGTTTTTGGGTTGTTGATTTTGTGTTGTGGGTTGTTTGTGGTTTGTTTGCCGGAGACAAAGGGCTTGTCTCTTTGTGATACCATGGAAGAACAAGAGCACAAGGAGGCCAATGCATGCTGA 1581 0.4636 MANATPLLSQSELSQPLSPSSSIESETPSVEKVLPSLDEFIEQSIGGFAWAQLLHAILVSLAWLFDGQQTFISIFTDAEPTWHCNHLSTEDCNSGSNICLLPKTAWEWDKPAYTFFISEWSLECVNSIIKGLPATSFFMGCLLGGFLLAPVADSSFGRKNMLFLSCLTMSVAALLTVFSTNIWMYSALRFISGFGRASIGASALVLSTETVGNAWRGQVGTIGFLCCTLGFLSLPAMAYMNRSSSWRLLYVWTSIPAIFYCLLIRFLVCESPRWLFMQGRKEEALATLEKLAPMENNTSLKSLDLCLSGALLKQEKMKMNLHLSIKMLLEKRWASRRLLAVMVIAFGIGIMYYGMPLGVGNLAYNLYLSVTLNVLAEMPSSLITMFYIGKWSRRSSVLALTTISGVSSIMCVVVGHGMKELQVGLELISFFCACTVFSVLMIYTLELFPTCVRSLAVAMVRQALMSSGTVSTILIAAGKTNAFLSYGVFGLLILCCGLFVVCLPETKGLSLCDTMEEQEHKEANAC* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1413 526 Gene3D MFS general substrate transporter like domains 50 521 IPR036259 -
Vvi19g1413 526 ProSiteProfiles Major facilitator superfamily (MFS) profile. 55 508 IPR020846 GO:0022857
Vvi19g1413 526 MobiDBLite consensus disorder prediction 1 26 - -
Vvi19g1413 526 Pfam Sugar (and other) transporter 125 512 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vvi19g1413 526 SUPERFAMILY MFS general substrate transporter 126 511 IPR036259 -
Vvi19g1413 526 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 49 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1413 Vvi-Chr19 23412509 23414089 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1413 11 522 Organic Solute Cotransporters AT1G79360 54.302 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1413 - - vvi:100241517 1012.29