Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1200 ATGATGATCAAAAAAATTTTAAAATCTATAAGTAATGAAGATGTTGCAAGTTTGGATTTGAATGGTTCGAAAGATAAGCTTCATGAAAAAATAAGAGAAAAAAGGTTCTTGATAGTTCTTGATGATGTTTGGAACCAAAATTTTGAAAAATGGGATAAAGTGAGAATTTTGTTGATGGTCGGTGCTAAAGGGAGTAAAATTGTAGTGACCACCCGAAAAACTAAAGTTGCATCAATTATGGGAGATAGTTCTCCCTTTATTTTGAAAGGTTTGGAAGAAAATCAGTCTTGGAATTTATTTTCAAAAATTGCATTTAGAGAAAGACTAGAGAATGTGCATCCAAACATCATAGGAATCGGAAAAGAAATTGCAACAATGTGTAAGGGAGTTCCTCTTATCATTAAGACTTTAGGAACAATGTTGCAGTTTGAATCTGAAGAACGGAATTGGTTGTCTATTAAAAACAATGAAAATCTCTTATCACTTCAAGATGAAAATTATAATGTTTTACCTGTGCTAAAATTGAGTTATGATAATTTACCAACACATTTGAGGCAGTGTTTTTCATATTGTGCCTTATTTCCAAAAGACTACGAAATTAAGAAAAAGTTGTTGGTACAATTATGGACAGCGCAAGATTACATCCAATCTTCAAATGAGAATGAGCACTTAGAAGATGTAGGGGATCGATATTTTAAGGAATTGTGGTCAAGGTCATTGTTTCATGAAGTTGAAAGAGATGTTGTTAATGATATAGTAAGTTGTAAAATGCATGACCTTATACATGATCTTGCACAATCGATTATAGGATCTGAGGTCCTAATTTTAAAAGACAATATAAAGAACATTCCAGAAAAAGTTCGTCATATACTCTTATTTGAACAGGTGAGTCTTATGATAGGGAGTTTAAAGGAAAAACCCATAAGGACCTTTCTGAAGCTTTATGAAGATGATTTTAAAAATGATTCAATTGTAAATTCACTTATTCCAAGTTTGAAGTGTTTACATGTGCTGAGCTTGGATAGTTTCAGCATAAGGAAGGTACCAAAATATTTAGGTAAATTAAGTCATTTAAGGTATCTTGATCTTTCCTATAATGATTTTGAGGTGCTTCCAAATGCTATTACAAGGTTAAAGAATTTACAAACACTAAAACTCAATGATTGTTGTAATCTAAAAGAATTTCCAAAATTTACAAAGAAATTGATCAATTTGAGGCACTTGGAGAATGATAGGTGTGATAATTTGACTCATATGCCATGTGGAATAGGAGAGTTGACTTTGCTTCAAAGCTTACCATTATTCATTGTTGGCAATGGGAGAGAGTTCTCAAAGAACAAAAGAATTGGTAGGTTGAGTGAATTGAAAAGGCTTAGCCAATTAGGAGGAATATTGCAAATAAAAAATCTTCAAAATGAAAGGGATGTTCTACCAATATCCAAGGGAGAAATTTTGAAAGAAAAACAATACCTTCAATCCTTGAGATTAGAATGGAGATGGTGGGACCTAGAAGCTAAGTGGGATGAGAATGCTGAGTTAGTGATGGAAGGTCTCCAACCACACCTAAACTTAAAGGAGCTTTCTGTATATGGTTATGAAGGTAGGAAGTTTCCAAGTTGGATGATGAATGATGGGTTGGATTCCTTGCTTCCCAACCTATGTCACATTGAAATGTGGGATTGTTCAAGATGCCAAATTCTGCCACCCTTTTCTCAACTCCCTTTTCTCAAGTCTTTGGAGCTCTATAACATGAAAGAGGTGGAGGACATGAAGGAGAGTTCACCAGGAAAACCATTCTTCCCATCTCTTCAAATACTCAAATTCTATAAAATGCCAAAGTTGACGGGATTGTGGAGGATGGACATACTAGCAGAGCAAGGTCCTTCATTTCCTCATCTTTCAGAGGTATATATAGAGAAGTGCTCTAGTTTGACATCAGTTCGACTATCATCAAATTGCCCCAACTTGGCATCCTTCAAAGGGGCTTCATTACCTTGTCTTGGGAAACTAGCCCTGGATAGAATCAGAGAGGATGTATTACGACAGATAATGTCTGTCTCAGCTTCTTCTTCATTGAAGTCTCTGTATATTTTGAAGATAGATGGTATGATATCTCTCCCAGAGGAGTTGCTTCAACATGTTTCCACTCTCCATACTCTCAGCCTTCAGGGCTGCTCGAGTTTATCAACATTGCCACACTGGTTAGGCAACCTTACCTCACTTACACACCTTCAAATACTAGACTGTCGTGGCTTGGCAACATTACCACACTCCATAGGCAGTCTCACCTCACTTACAGACCTTCAAATATATAAATCTCCTGAGTTGGCATCACTGCCAGAAGAGATGCGCTCTCTCAAAAACCTTCAGACACTTAATATCTCTTTTTGTCCACGCTTAGAGGAAAGATGCCGACGGGAAACAGGTCAAGACTGGCCCAATATTGCTCATGTCACAGAAATTAACATTTACCCGCAATGA 2481 0.362 MMIKKILKSISNEDVASLDLNGSKDKLHEKIREKRFLIVLDDVWNQNFEKWDKVRILLMVGAKGSKIVVTTRKTKVASIMGDSSPFILKGLEENQSWNLFSKIAFRERLENVHPNIIGIGKEIATMCKGVPLIIKTLGTMLQFESEERNWLSIKNNENLLSLQDENYNVLPVLKLSYDNLPTHLRQCFSYCALFPKDYEIKKKLLVQLWTAQDYIQSSNENEHLEDVGDRYFKELWSRSLFHEVERDVVNDIVSCKMHDLIHDLAQSIIGSEVLILKDNIKNIPEKVRHILLFEQVSLMIGSLKEKPIRTFLKLYEDDFKNDSIVNSLIPSLKCLHVLSLDSFSIRKVPKYLGKLSHLRYLDLSYNDFEVLPNAITRLKNLQTLKLNDCCNLKEFPKFTKKLINLRHLENDRCDNLTHMPCGIGELTLLQSLPLFIVGNGREFSKNKRIGRLSELKRLSQLGGILQIKNLQNERDVLPISKGEILKEKQYLQSLRLEWRWWDLEAKWDENAELVMEGLQPHLNLKELSVYGYEGRKFPSWMMNDGLDSLLPNLCHIEMWDCSRCQILPPFSQLPFLKSLELYNMKEVEDMKESSPGKPFFPSLQILKFYKMPKLTGLWRMDILAEQGPSFPHLSEVYIEKCSSLTSVRLSSNCPNLASFKGASLPCLGKLALDRIREDVLRQIMSVSASSSLKSLYILKIDGMISLPEELLQHVSTLHTLSLQGCSSLSTLPHWLGNLTSLTHLQILDCRGLATLPHSIGSLTSLTDLQIYKSPELASLPEEMRSLKNLQTLNISFCPRLEERCRRETGQDWPNIAHVTEINIYPQ* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1200 826 ProSiteProfiles Leucine-rich repeat profile. 357 379 IPR001611 GO:0005515
Vvi19g1200 826 PANTHER DISEASE RESISTANCE PROTEIN RP 25 641 IPR044974 GO:0006952
Vvi19g1200 826 Gene3D Ribonuclease Inhibitor 276 623 IPR032675 -
Vvi19g1200 826 SUPERFAMILY RNI-like 600 802 - -
Vvi19g1200 826 SUPERFAMILY L domain-like 256 666 - -
Vvi19g1200 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 191 IPR027417 -
Vvi19g1200 826 Gene3D - 177 267 IPR036388 -
Vvi19g1200 826 FunFam Probable disease resistance protein At1g63360 177 267 - -
Vvi19g1200 826 Gene3D - 1 87 IPR027417 -
Vvi19g1200 826 PRINTS Disease resistance protein signature 127 141 - -
Vvi19g1200 826 PRINTS Disease resistance protein signature 30 44 - -
Vvi19g1200 826 PRINTS Disease resistance protein signature 712 728 - -
Vvi19g1200 826 Pfam NB-ARC domain 4 179 IPR002182 GO:0043531
Vvi19g1200 826 Pfam Leucine rich repeat 335 388 IPR001611 GO:0005515
Vvi19g1200 826 Gene3D - 90 176 IPR042197 -
Vvi19g1200 826 Gene3D Ribonuclease Inhibitor 649 808 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1200 Vvi-Chr19 19813960 19816800 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1200 302 458 Receptor kinase-like Gene Family AT3G28890 34.375 7.89e-08 54.3