Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi19g1172 ATGCCCTGGTTCTCTTGCTTTGGTAGGAGGGCCAGTTCACCAGCTGGTGAAACTGATAAAGTTGATGAAGAGGTTTCTGGTATACACAATGTTCGGCTTTACATGTACAAAGAATTAAAGAATGCTACTGACGATTTTAGTCCAGCCAATAAAATTGGGGAGGGTGGTTTTGGTTCTGTCTATAAGGGAAGGCTTAAAGATGGAACGATTGCTGCTATAAAGGTTCTTGCAGCTGAATCTAAACAAGGGGTGCGGGAGTTCCTGACAGAGATTAATGTAATCTCAAATATAGAGCATGAATACTTAGTTAAGCTTTATGGCTGTTGTGTGGAAGCAAATCATAGAATTTTGGTCTACAACTTCCTCGAGAATAATAGCCTAGCACAAACTCTTCTTGGTGGAGGGTACAGTGGCATGCAGTTTAGTTGGCGAACACGATCTAGAATTTGTATTGGGGTTGCACGTGGGCTTGCCTTTCTTCATGAGGAAGTGCGACCATATATTGTTCACAGGGATATCAAAGCAAGTAATATCCTCCTTGATGGAAATCTAAATCCCAAGATTGCAGATTTTGGTCTTGCAAAGCTTATCCCGTCCAATATGACTCATGTTAGCACACGTGTGGCAGGAACAATAGGTTATTTGGCACCGGAGTATGCTATAAGAGGGCAGTTGACACGGAAAGCTGATATTTACAGTTTTGGTGTTCTCCTTGTGGAAATAGTCTGTGGGAGATGCAACACAAATACACGATTACCTATTGGAGAACAATATCTTCTTGAAAGGACCTGGGAACTTTATGAGCGAAAGGAGCTGGTAGGGCTGGTAGATGAGTCATTGAATGGGGCTTTTGATGCAGAGGAAGCCTGCAGATTCCTAAAGATTGGTCTTCTCTGTACCCAGGACACTCCAAAGCTCCGGCCATCCATGTCAAGTGTAGTGAAGATGCTAATTGGTGAAATGGATGTTGATTCCAGAGCGATTACGAAGCCTGGCCTAATCTCTGATTTCATGGACCTCAAAATCAGAAGTGAACCCAAACCTGTCCCTGATGCGAAGAACGTATCTGATAATTTATCATCTGGCTCGGATATCCAAGACAGTTCAACTATGTCATCAGGAATCACCTTCACTGCAGTATATGACCGGAGCATTTGA 1158 0.4301 MPWFSCFGRRASSPAGETDKVDEEVSGIHNVRLYMYKELKNATDDFSPANKIGEGGFGSVYKGRLKDGTIAAIKVLAAESKQGVREFLTEINVISNIEHEYLVKLYGCCVEANHRILVYNFLENNSLAQTLLGGGYSGMQFSWRTRSRICIGVARGLAFLHEEVRPYIVHRDIKASNILLDGNLNPKIADFGLAKLIPSNMTHVSTRVAGTIGYLAPEYAIRGQLTRKADIYSFGVLLVEIVCGRCNTNTRLPIGEQYLLERTWELYERKELVGLVDESLNGAFDAEEACRFLKIGLLCTQDTPKLRPSMSSVVKMLIGEMDVDSRAITKPGLISDFMDLKIRSEPKPVPDAKNVSDNLSSGSDIQDSSTMSSGITFTAVYDRSI* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi19g1172 385 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
Vvi19g1172 385 FunFam cold-responsive protein kinase 1 122 333 - -
Vvi19g1172 385 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1172 385 FunFam cold-responsive protein kinase 1 17 121 - -
Vvi19g1172 385 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Vvi19g1172 385 MobiDBLite consensus disorder prediction 348 367 - -
Vvi19g1172 385 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Vvi19g1172 385 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 354 - -
Vvi19g1172 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Vvi19g1172 385 Pfam Protein kinase domain 49 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi19g1172 385 CDD STKc_IRAK 52 317 - -
Vvi19g1172 385 SUPERFAMILY Protein kinase-like (PK-like) 27 317 IPR011009 -
Vvi19g1172 385 SMART serkin_6 46 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi19g1172 Vvi-Chr19 19138976 19141891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi19g1172 22 323 Receptor kinase-like Gene Family AT1G53430 56.106 1.05e-108 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi19g1172 Pkinase 2.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi19g1172 - - vvi:100259465 769.229