Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1793 ATGGTCGAAACCTACAGGTTAAGGTCCATCGATTGGAGACCTTCGCCGGTGGTGGCGCTAGCCACCACCATCGACGGCGCGCGAGTTGCCGCCGTTCGCCAAGATGGCTCTCTTGAAATCTGGCTTGTTTCTCCTGGCGCCATCGGCTGGCACTGTCAGCTGACTATTCACGGAAGCCCCGACGGAAGAGTGACGTCGCTTATTTGGTGCCCTGGCGGTGTCGACGGAAGCCGTTTGTTTTCCTCCAACGTCGATGGCACGGTTTCTAGGTGGGATCTTTTCAACTTGAAGCAGGAGACGGTGCTGAAATCTGAAGTCTCAATCTGGCAAATGGCGATGAAGCTTCCTATTGATGACAAGGTAAAAGATGAAAGTAAGGATGGACGTATGGGGACCGAAAATGGGAACGGTTTCCATGATTTTGATGAACATGAGAGCAGTGATAGTGATGATGATTCTCATTCGCCTGGTCCTCTTGAGCGTTCATATAGGGAGCTTCCACGTGTGGCGATTGGTTTTAATGATGGAAGATTGAGAATCTATGAAATCTCTGACTCTGATGAATTTATTCTTGTAAAATCTTTTCCCCCCGTCACAGGACGAGTTTTAAGTGTGACTTGGAGTGCAGATGCTAACTACATATATTCAGGAAGCAGTGATGGTTTGATACGTTGCTGGAATGCTACATTGGGAAATGAAGTCTACAGGATTACAGCTGGACTTGGAGGGTTGGGCAGTGGGCAAGAACTTTGCATATGGTCATTACTGTCTCTAAGGAATGGTACACTTGTCAGTGCGGACAGCAGTGGTAGTGTTCAGTTTTGGGATAGCCAGCATGGAACTCTCTTGCAAGCACATTCTTTACATAAGGGACATGTATTTGCTCTGGCAGCAGCTCCTAGTCATAATAGGGTGTTTTCTGCTGGTTCTGATGGTCAGGTTATTCTTTACAAGCTTTCTGATAGTCAGGCAGCATCAGCAGATGATATCAACTATTCTGCTATGACGAAGAGATGGATCTATATTCACCATGTAAGGTCTCATACACACGACATCAGGGCCCTTTCTGTTGCTGTACCGATAAGTCCTGAAGGTGACATTAACCCTGAAATTAACCCAGAAAAAAGGATTAAGAGCAGGCGAGGTGCAAGAAAGCCTGCTGATTTTAGTTACCATAAGTGGGCTCATTTGGGGGTTCCCATGCTTATATCAGCAGGGGATGACACAAAACTTTTTGCCTACCCAGTCAAAGAATTCACCCAGTTCCCTCCTCATGACATCTGTCCTGCACCCCAAAGGACACCCATTCAACTAGTGCTCAATTCTATTTTTAATCAATCTAAAATGCTTTTAGTCCAATCATCAAAGCACATAGATGTTCATTTGCTACCGCTTAAAAATGGTTCCACCCCTGGGGCCCTTATGAAGACCGAAATAGTGGCTCGAGTCAAGAGTAAGGCATCTCGCAAGATAATTTGCAGCACCATTTCTAATTCAGGGTCGCTCTTTGCATACTCTGATCATAAAAGGCCTAGTCTTTTGGAACTGAGAAGGTGTGAAATGGGCAAGATCACATGGAATGTTGATAGAAGGGATCTTCCTCAAAGGTTACCATTTGCCCACTCTATGGTTTTTTCTCATGACTCTTCCAAGTTGATAGTAGCAGGTTGCGACAGAAAGATATATGTTGTGGATGTTGGGAAGTCTGAATTAGTGCATACTTTTACACCACGTCGTGAGTCTCAGGATGAGGATTTGCCTCCAACTGAGCCACCGATAACGAGATTGTTTTCTAGTTCTGATGGGCAATGGTTGGCAGCTGTGAACTGTTTTGGGGATATATATGTATTTAACCTGGAGATACAAAGCCAGCACTGGTTCATTTCAAGATTAGATGGCGCCTCTGTTACAGCTGGTGGATTTCCACCCCAAAATGACAACGTTCTGATAGTTACAACATCCTCAAATCAAGTGTATGCACTTGACGTAGAGGCCAAGCAGTTAGGAGAATGGTCCAAACGACATACTTTTGCTCTTCCTAGGAGATACCAGGAATTTCCCGGTGAAGTTATTGGGCTTTCATTCCCTCCAGCAGAAGCTTCATCTTCTCCAACGGCAATATCATCTTCGGTTGTTGTTTACAGCTCTAGGGCAATGTGCTTGATTGACTTTGGGTTGCCTGTGGAGCAAGATGAAGGTGATATGCTTAACAAACAAGATTCAAGGTCTGGGAATTTACAATATTTTAGTGTTAAGAAGGGGACTAAGAGGAAGTTTGAAGTTTTACCAATAGATAAGCCTGTTAGGAGGAACTTTCAAGTTCTACCATTAGAGAATCCTGTCTTATTTTTAGCTCATACTTCAAAAAATTCGTTATTTATAGTAGACAAACCCTGGTTGCAAGTGGTCAAGAGTTTAGAAGCCCCACCAGTCCACAGACATATATATGGGACATGA 2457 0.444 MVETYRLRSIDWRPSPVVALATTIDGARVAAVRQDGSLEIWLVSPGAIGWHCQLTIHGSPDGRVTSLIWCPGGVDGSRLFSSNVDGTVSRWDLFNLKQETVLKSEVSIWQMAMKLPIDDKVKDESKDGRMGTENGNGFHDFDEHESSDSDDDSHSPGPLERSYRELPRVAIGFNDGRLRIYEISDSDEFILVKSFPPVTGRVLSVTWSADANYIYSGSSDGLIRCWNATLGNEVYRITAGLGGLGSGQELCIWSLLSLRNGTLVSADSSGSVQFWDSQHGTLLQAHSLHKGHVFALAAAPSHNRVFSAGSDGQVILYKLSDSQAASADDINYSAMTKRWIYIHHVRSHTHDIRALSVAVPISPEGDINPEINPEKRIKSRRGARKPADFSYHKWAHLGVPMLISAGDDTKLFAYPVKEFTQFPPHDICPAPQRTPIQLVLNSIFNQSKMLLVQSSKHIDVHLLPLKNGSTPGALMKTEIVARVKSKASRKIICSTISNSGSLFAYSDHKRPSLLELRRCEMGKITWNVDRRDLPQRLPFAHSMVFSHDSSKLIVAGCDRKIYVVDVGKSELVHTFTPRRESQDEDLPPTEPPITRLFSSSDGQWLAAVNCFGDIYVFNLEIQSQHWFISRLDGASVTAGGFPPQNDNVLIVTTSSNQVYALDVEAKQLGEWSKRHTFALPRRYQEFPGEVIGLSFPPAEASSSPTAISSSVVVYSSRAMCLIDFGLPVEQDEGDMLNKQDSRSGNLQYFSVKKGTKRKFEVLPIDKPVRRNFQVLPLENPVLFLAHTSKNSLFIVDKPWLQVVKSLEAPPVHRHIYGT* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1793 818 SMART WD40_4 279 318 IPR001680 GO:0005515
Vra6g1793 818 SMART WD40_4 3 42 IPR001680 GO:0005515
Vra6g1793 818 SMART WD40_4 188 227 IPR001680 GO:0005515
Vra6g1793 818 SMART WD40_4 238 276 IPR001680 GO:0005515
Vra6g1793 818 SMART WD40_4 530 565 IPR001680 GO:0005515
Vra6g1793 818 SMART WD40_4 49 92 IPR001680 GO:0005515
Vra6g1793 818 Gene3D - 146 239 IPR015943 GO:0005515
Vra6g1793 818 Gene3D - 539 734 IPR015943 GO:0005515
Vra6g1793 818 Gene3D - 2 135 IPR015943 GO:0005515
Vra6g1793 818 Gene3D - 243 511 IPR015943 GO:0005515
Vra6g1793 818 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 195 227 - -
Vra6g1793 818 MobiDBLite consensus disorder prediction 136 160 - -
Vra6g1793 818 SUPERFAMILY WD40 repeat-like 15 619 IPR036322 GO:0005515
Vra6g1793 818 MobiDBLite consensus disorder prediction 122 160 - -
Vra6g1793 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 327 IPR001680 GO:0005515
Vra6g1793 818 SUPERFAMILY WD40 repeat-like 394 697 IPR036322 GO:0005515
Vra6g1793 818 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 236 IPR001680 GO:0005515
Vra6g1793 818 Pfam WD domain, G-beta repeat 202 227 IPR001680 GO:0005515
Vra6g1793 818 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 1 818 IPR044622 GO:0010073|GO:0035266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1793 K14548 - gmx:100776641 1232.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1793 6 34367268 34373933 Vra6g1793 6 34367268 34373933 ECH