Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1792 ATGGTGGTGCTGTCGTCGGAGGATGAATTCGACGAGGAGCCCGGCGAGGTCATTGAATCGGCGCCGCCGCAGAGGGTGGGCGAAGAGAGGCAACTCAGAGGTCTCAAGAAGAAGCTTCTCAGACACGGACACGGCTGGGAAACCCCCAACTTCAACGACGTCGTAACAGTTCACCGTGTTGGGAAATTGCTCGATGGAGCGGCGTTGGGTTCTTCCACTAGGGACACGGATCAGCCCTTGACGTTTACTCTTGGCAATGGCGATGTTCCTGGTTTGGACCGTGGGATTACGAGTATGAAGAAAGGGGAGGTGGCATTGTTCACATTACCTGCAGATGGTGAAGGTGATGTTTGGCGTGATTCCGACTCGGTTGTGCAGTTTGAGGTGGAACTCCTTTCTTGGATCAGAGTGGTGGATGTGTGCAAAGATGGTGGCGTTATCAAGAAAATTGTGGAGCAGGGGAGTGGGAACGATCGCCCTTCTGATCTCGATGAAGTGCTTGTGAAGTATCAGGTGGCACTAGTTGATGGTACTGTTGTTGAAGAGACACCTGGAGGAGGAGTTGAGTTTTACGTGAAGGATGGTCATCTTTTTCCGATTTTGCCAAAAGTGATCATGACTATGACGAGGGGAGAAAAGGCCGAATTAATTGTCCAACCTCAGTATGCCTTTGGGGAGACGGAAAGAGATTCTGGAACTGGGCTCTGTCGAATCCCTCCAAATTCAGTACTGCATGCTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTTACTGGTGACTCCAAGGTGCTTAAAAAGATATTGAAAGAAGGGGAGGGTGCTTTCACAGCCAATGAGGATGCACATGTTACTGTCAGCTTCACAGCTATGCTAGAAGATGGCACGGTATTTGAGAAAAGAAGAACTGGGGAAGAGCAACCCTTGGAATTCATAACTGATGAGGAACAAGTGATTGTTGGTCTAGATCGAGCTGTGGCAACTATGAAGAAGGGTGAGAGGGCCATTATTTCCATACATCCTGATTATGCATTTGGAAATGTTGAAGTGAGACGAGATCTTGCTATTGTTCCACCAGGCTCAAATGTAGTCTATGACGTTGAGATGCTGGATTTTATCAAGGAGAAAGCACCATGGGAATTGAATAGTAAGGAGAAAATTGAGGTGGCTGGGAGGAAGAAAGAAGAAGGAAATGTACTATTTAAAGGTGGCAATTACCTCCGAGCAAAGAAGAAGTATGAACAGGCGGTTGATTTTCTTAGTGATGATGGATCCTTTGGGTATAGTGAGCAAAAGCAAGCTGATGCACTGAGAGTGTCATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTAGTGGAGCAATCAAGCTATGTTCGCAGGTGCTTGATGTTGAATTTTGCAACGTGAAAGCTTTTTACAGACGTGCACAAGCATATATAGAAACTGGAGACTTCCTATTAGCAGATGTAGACATCAAGAAAGCTCTTGTGGCGGACCCACAAAACAGGGAGGTAAAGATAATTCAAAAGAAACTGAAGCAACTTCAAGCTGACAAAGACAAAAAAGATGCGAAGCTATACGAAAACATGTTTTCGTGTAAAACAAAGGACTCGTCTACGGCCATAAAGAGATTGAAGGTTGAGAAAGACGAGAGGGAAAACGAAGATGGAGCAAAAATGGAAGAGGACACAGTTGCTGATAGCGCAGTGATTTAA 1731 0.4564 MVVLSSEDEFDEEPGEVIESAPPQRVGEERQLRGLKKKLLRHGHGWETPNFNDVVTVHRVGKLLDGAALGSSTRDTDQPLTFTLGNGDVPGLDRGITSMKKGEVALFTLPADGEGDVWRDSDSVVQFEVELLSWIRVVDVCKDGGVIKKIVEQGSGNDRPSDLDEVLVKYQVALVDGTVVEETPGGGVEFYVKDGHLFPILPKVIMTMTRGEKAELIVQPQYAFGETERDSGTGLCRIPPNSVLHANIELVSFKPVINVTGDSKVLKKILKEGEGAFTANEDAHVTVSFTAMLEDGTVFEKRRTGEEQPLEFITDEEQVIVGLDRAVATMKKGERAIISIHPDYAFGNVEVRRDLAIVPPGSNVVYDVEMLDFIKEKAPWELNSKEKIEVAGRKKEEGNVLFKGGNYLRAKKKYEQAVDFLSDDGSFGYSEQKQADALRVSCWLNGAACSLKLNDFSGAIKLCSQVLDVEFCNVKAFYRRAQAYIETGDFLLADVDIKKALVADPQNREVKIIQKKLKQLQADKDKKDAKLYENMFSCKTKDSSTAIKRLKVEKDERENEDGAKMEEDTVADSAVI* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1792 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 282 374 IPR001179 GO:0003755
Vra6g1792 576 SUPERFAMILY FKBP-like 139 254 - -
Vra6g1792 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 159 251 IPR001179 GO:0003755
Vra6g1792 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 278 371 IPR001179 GO:0003755
Vra6g1792 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 112 IPR001179 GO:0003755
Vra6g1792 576 SUPERFAMILY TPR-like 385 535 IPR011990 GO:0005515
Vra6g1792 576 MobiDBLite consensus disorder prediction 549 576 - -
Vra6g1792 576 Gene3D - 256 376 IPR046357 GO:0003755
Vra6g1792 576 Gene3D - 29 136 IPR046357 GO:0003755
Vra6g1792 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 163 254 IPR001179 GO:0003755
Vra6g1792 576 SMART tpr_5 440 473 IPR019734 GO:0005515
Vra6g1792 576 SMART tpr_5 391 424 IPR019734 GO:0005515
Vra6g1792 576 SMART tpr_5 474 507 IPR019734 GO:0005515
Vra6g1792 576 Gene3D - 137 254 IPR046357 GO:0003755
Vra6g1792 576 MobiDBLite consensus disorder prediction 549 568 - -
Vra6g1792 576 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 265 374 - -
Vra6g1792 576 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 261 - -
Vra6g1792 576 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 373 558 - -
Vra6g1792 576 SUPERFAMILY FKBP-like 260 391 - -
Vra6g1792 576 Gene3D Tetratricopeptide repeat domain 377 534 IPR011990 GO:0005515
Vra6g1792 576 PANTHER PEPTIDYLPROLYL ISOMERASE 373 558 - -
Vra6g1792 576 PANTHER PEPTIDYLPROLYL ISOMERASE 265 374 - -
Vra6g1792 576 PANTHER PEPTIDYLPROLYL ISOMERASE 5 261 - -
Vra6g1792 576 SUPERFAMILY FKBP-like 12 136 - -
Vra6g1792 576 Coils Coil 510 530 - -
Vra6g1792 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 52 112 IPR001179 GO:0003755
Vra6g1792 576 ProSiteProfiles TPR repeat profile. 474 507 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1792 Vra-Chr6 34354511 34364758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1792 25 537 Calmodulin-binding Proteins AT3G25230 54.127 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1792 K09571 - gmx:100798382 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1792 6 34354511 34364758 Vra6g1792 6 34354511 34364758 ECH