Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1781 ATGAAGTCGATGAATGATGGTAACACTGATGATGGGAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAAATTACTTCTTCTGCTGACCCTCCCCATCATCACCATCATCACTTCTATCATCACCCTCAGGTTTCTGCAGCTGCAGCACCTTGCAACACTGTTCCTACAGGCTTCTATATTTCCCCTTCACACCTTAACCCCTCAGGAATCTGCTATGGCGTTGGTGAAAACGGTGCCTTTCACCCTCCCTTGGCCATGATGCCCCTCAAGTCAGACGGGTCACTTTGCATTATGGAAGCTCTCACCAGATCACAAACCCAAGTGATGGTGCCAACCACATCCCCAAAACTGGAGGACTTCCTTGGTGGTGCAAGTATAGGAGCTCAAGACTATGGAAGGCATGAAAGAGAAGCAATGGCTCTGAGCCTAGACAGCGCCTACTATAGCAGCCAGAATGCGGAACCTGAAGCCAACAGAGGCCATCCTTCTTCTCTGGGCCTTCTTTCTGACCCCTTCAGGCAACAAACCCACCCATATTACTCTGGGCTTGGGATTTACCAAGTGGAGGAGGAAGCCAAGCAACCACACGTGACAGTTTGCAGCTCCCAAATGCCTCAAGTGGTGGAAGAAGGTGTTACTTGCTTCAAAAACTGGGTGCCAACAAGGGGATATTCTTCCACTCAACAGAATCCGGAGCAGCAGCAAGTGAATAATAGCAGTGGCATGGGGGAGGGTCACGGTGCTTCTGGGAATGCTGGTGTTGGCTGTGGAGAGTTGCAGTCTTTGAGTTTGTCTATGAGTCCTGGTTCTCAATCTAGCTGTGTCACAGTTCCAACTCAGATCTCATCTTCCAGAACTGAATCAGTAGCTGGAGATGCCAAAAAGAGAGGCTCTGCTAAACTTGGCCAGAAGCAACCCGTGCATAGGAAATCCATTGACACATTCGGCCAGAGAACTTCTCAGTATAGAGGAGTAACAAGGCATCGATGGACTGGAAGATATGAAGCACATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAAACCAGGAAAGGACGACAAGTTTATTTGGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCATATGATCTTGCGGCTCTCAAGTATTGGGGACCTTCAACTCACATAAACTTCCCGCTGGAAAATTACCAAACTGAACTTGAAGAAATGAAGAATATGAGCAGGCAGGAGTATGTGGCCCACTTGAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCATCAATGTACAGAGGAGTGACAAGGCACCACCAACACGGTAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGTACTCAAGAAGAAGCAGCTGAAGCATACGACGTAGCTGCGATCAAATTTCGTGGGGTGAATGCTGTTACCAACTTCGACATCTCAAGATACGATGTTGAAAGGATCATGGCCAGCAACACCCTTCTTGCTGGAGAGTTGGCTAGAAGAAACAAGGATAGTGAGCCAAGAACTGAGGCCATAGAGTACAACGGTGTGTCAAGCCAACATGAAGCTGAGACTGTGAACAACAATGAGAACAATGAGAAGGGATCATCGGATTGGAAGATGAGTTTGTATCATCAGCAGCAACAACAACAGTCAAACAACAACTGTGACATGAAAACCATGAAGTGTGGAAATTATAGAGGTTCTGCTTTCTCTGTGTCCCTACAAGATCTCATTGGGATTGACTCAGTAGGATCTAGCCAGGCCATGATAGAGGAGTCTACTAAGATAGGTACTCATTTTTCAAACCCCTCCTCGCTGGTCACCAGTTTAAGCAGCTCAAGGGAAGGTAGCCCTGACAAAACGGGTCCCACCATGCTCTTTCCTAAGCCTCCGGTGGGGTCAAAGGTTGTCACTAGCCCTATTGCCAATGGTGTAAGTGTTAGCTCATGGTTTCCCACTCAAATGAGGCCAGTCTCCATGTCTCACTTGCCGGTTTTTGCTGCTTGGAGTGATACCTAG 2049 0.4754 MKSMNDGNTDDGNNHNWLGFSLSPHMKMEITSSADPPHHHHHHFYHHPQVSAAAAPCNTVPTGFYISPSHLNPSGICYGVGENGAFHPPLAMMPLKSDGSLCIMEALTRSQTQVMVPTTSPKLEDFLGGASIGAQDYGRHEREAMALSLDSAYYSSQNAEPEANRGHPSSLGLLSDPFRQQTHPYYSGLGIYQVEEEAKQPHVTVCSSQMPQVVEEGVTCFKNWVPTRGYSSTQQNPEQQQVNNSSGMGEGHGASGNAGVGCGELQSLSLSMSPGSQSSCVTVPTQISSSRTESVAGDAKKRGSAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKDSEPRTEAIEYNGVSSQHEAETVNNNENNEKGSSDWKMSLYHQQQQQQSNNNCDMKTMKCGNYRGSAFSVSLQDLIGIDSVGSSQAMIEESTKIGTHFSNPSSLVTSLSSSREGSPDKTGPTMLFPKPPVGSKVVTSPIANGVSVSSWFPTQMRPVSMSHLPVFAAWSDT* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1781 682 PRINTS Ethylene responsive element binding protein signature 328 339 IPR001471 GO:0003700|GO:0006355
Vra6g1781 682 PRINTS Ethylene responsive element binding protein signature 469 489 IPR001471 GO:0003700|GO:0006355
Vra6g1781 682 MobiDBLite consensus disorder prediction 274 315 - -
Vra6g1781 682 MobiDBLite consensus disorder prediction 229 260 - -
Vra6g1781 682 CDD AP2 326 393 IPR001471 GO:0003700|GO:0006355
Vra6g1781 682 SMART rav1_2 429 493 IPR001471 GO:0003700|GO:0006355
Vra6g1781 682 SMART rav1_2 327 399 IPR001471 GO:0003700|GO:0006355
Vra6g1781 682 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 13 680 - -
Vra6g1781 682 MobiDBLite consensus disorder prediction 611 629 - -
Vra6g1781 682 CDD AP2 428 489 IPR001471 GO:0003700|GO:0006355
Vra6g1781 682 Pfam AP2 domain 430 479 IPR001471 GO:0003700|GO:0006355
Vra6g1781 682 Pfam AP2 domain 327 385 IPR001471 GO:0003700|GO:0006355
Vra6g1781 682 Gene3D AP2/ERF domain 326 395 IPR036955 GO:0003700|GO:0006355
Vra6g1781 682 Gene3D AP2/ERF domain 429 489 IPR036955 GO:0003700|GO:0006355
Vra6g1781 682 MobiDBLite consensus disorder prediction 611 641 - -
Vra6g1781 682 MobiDBLite consensus disorder prediction 274 294 - -
Vra6g1781 682 ProSiteProfiles AP2/ERF domain profile. 429 487 IPR001471 GO:0003700|GO:0006355
Vra6g1781 682 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 680 - -
Vra6g1781 682 MobiDBLite consensus disorder prediction 229 251 - -
Vra6g1781 682 SUPERFAMILY DNA-binding domain 428 489 IPR016177 GO:0003677
Vra6g1781 682 MobiDBLite consensus disorder prediction 526 546 - -
Vra6g1781 682 ProSiteProfiles AP2/ERF domain profile. 327 393 IPR001471 GO:0003700|GO:0006355
Vra6g1781 682 SUPERFAMILY DNA-binding domain 326 395 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1781 Vra-Chr6 34131287 34136004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1781 410 682 AP2-EREBP Transcription Factor Family AT4G37750 26.710 2.10e-14 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vra6g1781 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1781 K09285 - gmx:100798179 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1781 6 34131287 34136004 Vra6g1781 6 34131287 34136004 ECH
Vra6g1781 6 34131287 34136004 Vra5g1427 5 21000000 21004031 PCT