Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1780 ATGGGGGGTCAGGAAAATGCCATGGGGTTTCAACACGGAAATGAGAACATTCTGACTTGTCCATCTTCAGGTCTCAGTGTTGCCAATGTTAATGTTTCAGAAATGGCTATTAGTTCCGTGTCTATGGCCAAGCCTTCTGATGTTGCTAACCCTTTTCTTCCTTCTTCCGCTTGGGATCCACTTGTTTCCTTGAGTCAGGCTCAAACTTTTGGAGGCTCCTCAATGGTTTCTCATACCGACTTTGCCAATGCCAACTCTTCTTACCCTCTTGTTCTGGAAAACCAAGGAATTACCAACACTTCCCACCTTGTTCAATACATGTCTGACTCAAATCTAGGGGGCATGGTCCCCAAGGTTCACTCCTATGCAACCAGGGGCTTCTCAGAAATGGTTGCTGCTGCCTCTTTTGTCCACCATGGTTCTTCTGATGTGGCTAACTCAGGCTACCCACCACATTATAATCCGATCAAGGAGACTCAGATTAATGGTGAACAATCTCAGGTTGAGGATTCAATTCCTGAAGAGGAAGCACCAGGATCTGGTCCTAGTGGGAATAGAAGAAAGAGAGGGCTTGATCATAATTCTACCTTCAGCCCAAATAAGAATGCTGAGAGTGAAACTGTGAAAGATTCTCCGGGGAGGGCCTGTGATGGTTCAAAAGAACATGAAAAGAAGCCAAAAGTTGAGCAGAACAACAGTGCAGATTTGCGTGGCAAGCAATCAGCGAAGCAAGCTAAGGACAACAGTTCTCAAAGTGGAGAAGCTCCTAAAGAAAACTTCATTCACGTGAGAGCTAGAAGAGGACAAGCCACAAACAGCCACAGTCTTGCAGAAAGAGTGAGAAGAGAAAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCTGGTTGCAACAAGATAACTGGCAAAGCCGTAATGCTGGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTAAACTTTGATGTAGACAGGATTCTATCCAAGGATATTCTTCAATCACGCATAGGACATGGAATTAGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTCCCCAGTGGAAATTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTCCCTCCTTTGCCCCAGAATGTTTTGGACCATGAGTTCCAAAGCTTCTATGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAG 1290 0.4457 MGGQENAMGFQHGNENILTCPSSGLSVANVNVSEMAISSVSMAKPSDVANPFLPSSAWDPLVSLSQAQTFGGSSMVSHTDFANANSSYPLVLENQGITNTSHLVQYMSDSNLGGMVPKVHSYATRGFSEMVAAASFVHHGSSDVANSGYPPHYNPIKETQINGEQSQVEDSIPEEEAPGSGPSGNRRKRGLDHNSTFSPNKNAESETVKDSPGRACDGSKEHEKKPKVEQNNSADLRGKQSAKQAKDNSSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIGHGISAYGPGINSSHTFPSGNFHGTLAGMPSTSSQFPPLPQNVLDHEFQSFYGIGYDSNTALDNLGPNGRLKTEL* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1780 429 MobiDBLite consensus disorder prediction 162 259 - -
Vra6g1780 429 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 11 429 IPR024097 GO:0006355
Vra6g1780 429 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 429 - -
Vra6g1780 429 CDD bHLH_AtBPE_like 259 344 - -
Vra6g1780 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 319 IPR011598 GO:0046983
Vra6g1780 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 337 IPR036638 GO:0046983
Vra6g1780 429 Pfam Helix-loop-helix DNA-binding domain 272 320 IPR011598 GO:0046983
Vra6g1780 429 SMART finulus 275 325 IPR011598 GO:0046983
Vra6g1780 429 MobiDBLite consensus disorder prediction 233 256 - -
Vra6g1780 429 Gene3D - 266 340 IPR036638 GO:0046983
Vra6g1780 429 MobiDBLite consensus disorder prediction 207 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1780 Vra-Chr6 34103617 34107834 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1780 1 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 41.972 3.21e-83 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra6g1780 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1780 - - gmx:100801930 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1780 6 34103617 34107834 Vra6g1780 6 34103617 34107834 ECH