Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1777 ATGGTGGATCCGTACGTTCTTGGCTGGATTCTGTTTTCCTTTCTGAGTCTCTTCGCGCTCTACAGCCTCGCTTTAGGCGGAGAGAGTCGGAATCGCGCTTCGCCGCCGAAGCCAGTAAACAGGATCGAGTTGTCGGAAACCGTGACCACCTCCACGAGTGAATGCAGATCGGATAAACGCGACGGCGACGCTGACGTCATTATTGTCGGAGCTGGTGTAGCCGGCGCAGCTCTGGCGCACACTCTCGGAAAGGATGGGCGTCGAGTACATGTGATTGAAAGAGATCTCAGTGAGCCTGACCGTATTGTTGGAGAGTTGCTACAACCAGGTGGCTATCTCAAATTGGTTGAGCTGGGGCTTGAAGACTGTGTAGACAAAATTGATGCTCAGCAAGTATTTGGTTATGCCCTTTTCAAGGATGGGAAACATACTCGTCTCTCTTACCCCTTAGAGAAGTTTCACTCAGATGTCAGTGGCAGGAGCTTTCACAATGGTCGCTTTATTCAGAGGATGCGGGAAAAGGCTTCCACCCTTCCCAACGTGCGATTAGAGCAAGGAACAGTCACTTCCCTAGTTGAAGAGAAGGGGACAATTAAAGGTGTGCAATATAAGAACAAAGATGGTCAGGAATTGACAACATTTGCACCTCTTACCATTGTTTGTGATGGCTGCTTCTCAAACTTACGCCGTTCTCTCTGTAATCCTAAGGTGGATGTTCCCTCATGTTTTGTTGGCTTACTTTTAGAGAACTGCGAGCTTCCATGCGCAAATCATGGCCACGTTATACTGGGAGACCCTTCACCCATTCTATTCTATCGTATAAGTAGTACAGAGATTCGCTGTCTGGTCGATGTACCTGGTAAGAAGGTTCCTTCTATTTCAAACGGTGAAATGGAAAAGTATTTGAAGACAACGGTAGCTCCACAGATTCCCCCTGAACTTTATGATGCCTTCGTAGCTGCTGTGGACAAGGGCAACATAAGGACAATGCCAAACAGAAGCATGCCGGCAGATCCTCTTCCTACACCTGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGTCATCCACTAACCGGAGGCGGAATGACTGTAGCATTGTCTGATATTGTGGTGCTAAGAAATCTTCTAAGGCCCTTGCCTGACCTCAATGATGCACCCACACTTTGCAAGTACCTGGAATCCTTTTATACCTTGCGTAAGCCTGTGGCATCCACCATAAATACATTAGCAGGTGCGCTTTACAAAGTATTTTGTGCATCCCCTGATCAGGCAAGGAAGGAAATGCGGCAAGCTTGCTTTGATTATCTAAGCCTTGGAGGCCTATTCTCTGAAGGACCTGTTTCCTTACTTTCTGGATTAAACCCTCGTCCCTTGAGTTTGGTTCTCCATTTCTTTGCCGTTGCAATATATGGTGTTGGCCGTTTATTATTACCGTTTCCTTCACCTAAGAGAATATGGATTGGGGCCCGATTAATATCTGGTGCATCTGGAATCATCTTCCCCATAATTAAGGCTGAAGGGATTCGGCAAATGTTTTTCCCTGCGACCGTTCCAGCTTATTACAGAGCTCCCCCGGTTGGACAATAG 1590 0.4742 MVDPYVLGWILFSFLSLFALYSLALGGESRNRASPPKPVNRIELSETVTTSTSECRSDKRDGDADVIIVGAGVAGAALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLVELGLEDCVDKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKASTLPNVRLEQGTVTSLVEEKGTIKGVQYKNKDGQELTTFAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLLLENCELPCANHGHVILGDPSPILFYRISSTEIRCLVDVPGKKVPSISNGEMEKYLKTTVAPQIPPELYDAFVAAVDKGNIRTMPNRSMPADPLPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLRPLPDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWIGARLISGASGIIFPIIKAEGIRQMFFPATVPAYYRAPPVGQ* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1777 529 PANTHER SQUALENE MONOOXYGENASE 1 529 IPR040125 GO:0004506|GO:0016126
Vra6g1777 529 SUPERFAMILY FAD/NAD(P)-binding domain 64 438 IPR036188 -
Vra6g1777 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 65 87 - -
Vra6g1777 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 214 229 - -
Vra6g1777 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 342 357 - -
Vra6g1777 529 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 357 373 - -
Vra6g1777 529 Gene3D - 58 435 IPR036188 -
Vra6g1777 529 Pfam NAD(P)-binding Rossmann-like domain 68 94 - -
Vra6g1777 529 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 529 - -
Vra6g1777 529 Pfam Squalene epoxidase 214 487 IPR013698 GO:0004506|GO:0016021|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1777 Vra-Chr6 34056083 34060404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1777 46 529 Miscellaneous Gene Families AT1G58440 80.493 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1777 K00511 - gmx:100804406 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1777 6 34056083 34060404 Vra6g1777 6 34056083 34060404 ECH