Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1776 ATGAACAAAGACGAAAACGATCGGAACGAAAAGAAAGCGAATGATATCAAGCTTTGGGGAGTTTTCCTCTTTGGATTACTCGGCGCCGCCGTCACTGCCTTCTCCCTGTCCAGGTCGCAGTCAAGAGGAGCGAGTGGCAGTTCTTTTCGATCATCATTCCAAGAAGAAGCATGGAAGAGGTACAATAAACGACTGCAAGAAGAGTATGAGGAGGAGGTGGAGAGGGTGGAACGTATAAAGCGCATGCAAAGTGTGTTTAATAGAGAAAGGGATAAGCGTAGAAGAAGCTACGAGAACTGGAGGGGAAGTGGTGGTGGTGCAGATCATCAACATTTTCAAAGAGATGATTGGTATTGGAAGGCCGAAGAATCCTTCAGAGAGCAGTGGGCAAATTATCAACACACTCCAGGAGAGAGCAGAAACTATTCACTATCACATCACTACTCAGTTTTGGGTCTTGACAGGTTTAGAACAACACCCTATACAGATGCCGAGATTAAGACAGCATTTAGAACCAAGGCAATGCAGTATCATCCTGACCAGAACCAGGATAATAGAGAGGCTTCTGAGGCCAAGTTCAAAGAAGTAATGTGTTCGTATGAAGCCATACAAAAAGAAAGGAAGAACCAGAATCTGTAA 639 0.446 MNKDENDRNEKKANDIKLWGVFLFGLLGAAVTAFSLSRSQSRGASGSSFRSSFQEEAWKRYNKRLQEEYEEEVERVERIKRMQSVFNRERDKRRRSYENWRGSGGGADHQHFQRDDWYWKAEESFREQWANYQHTPGESRNYSLSHHYSVLGLDRFRTTPYTDAEIKTAFRTKAMQYHPDQNQDNREASEAKFKEVMCSYEAIQKERKNQNL* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1776 212 SMART dnaj_3 145 208 IPR001623 -
Vra6g1776 212 Coils Coil 62 82 - -
Vra6g1776 212 SUPERFAMILY Chaperone J-domain 144 210 IPR036869 -
Vra6g1776 212 CDD DnaJ 147 196 IPR001623 -
Vra6g1776 212 Gene3D DnaJ domain 133 212 IPR036869 -
Vra6g1776 212 Pfam DnaJ domain 147 210 IPR001623 -
Vra6g1776 212 ProSiteProfiles dnaJ domain profile. 146 208 IPR001623 -
Vra6g1776 212 PANTHER HEAT SHOCK PROTEIN-BINDING PROTEIN 4 212 - -
Vra6g1776 212 PRINTS DnaJ domain signature 170 185 IPR001623 -
Vra6g1776 212 PRINTS DnaJ domain signature 188 208 IPR001623 -
Vra6g1776 212 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 4 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1776 Vra-Chr6 34042707 34048048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1776 139 211 Miscellaneous Gene Families AT5G49580 36.986 3.20e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1776 - - gmx:100804936 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1776 6 34042707 34048048 Vra6g1776 6 34042707 34048048 ECH
Vra6g1776 6 34042707 34048048 Vra5g1425 5 20966185 20971168 PCT