Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1772 ATGGGCAGAGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGTCCATGGTCTCCAGAAGAAGATGCTAAGCTCAAATCCTACATAGAAAAACATGGCACTGGTGGTAACTGGATTGCTTTGCCTCAAAAAATAGGCCTTAAGCGATGTGGCAAGAGTTGCCGCCTTAGGTGGCTGAACTATCTTCGCCCTAATCTCAGGCACGGTGGTTTCTCCGAGGAAGAAGACAACATTATTTGTAGCCTTTACATCAGTATCGGAAGCAGGTGGTCGGTGATTGCTGCACAATTGCCGGGAAGAACTGATAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTCTAGGGAAGCACCGAAGAGAGCCACGTAATAGAGGCAATTACAGCAGTGTTAAGCAAGAAATTAGTGATGCTAATAGAAGGAGTAGCGATGGTGATTCTTCTTCCTTATCCATGGTTCAGGAAAATAGTAGCACTAGTCAACAACATCAACAACATCAACAATTATGTTGGCCACAGAACATTAACATGCCAGTGCTGCCACTACCCATAGTACCCTTTCCATACACAACAAACCAAGGTCCAGGTTTCAACGACCAAGATTCCATCAAGAAACTCCTGATCAAACTAGGAGGAAGATTTTCAGGTGATTATTACCAGCCTACCCTTGATGGGTTGAACCTTCAATTCTCATCACAAGGGCAACAAGTTTACCAAGAACAAGTCCACGTTGGTTCCTCTTCTTCTTCAGCCTGCATTGTTGCCAACAACGAGGTACAGTTTGCACAAACTGGTCAATACTCTGGAGTTGATGACATGATGCAAGGACAAGATGGTAATTTCACTCCATCATTTGATGAAATGGTGCCTTCTTCTAATTATTCAGATGGGTTAGAGTTCTTGTACAATGAGGGCATGATCCACCACAAGATAACAGATTCTACTATAACTACTACTTGTGACCAAAACACCACCACCAGCACCACCACAAATTGGGTTGAAACCACCACTTCCATTTATCACCATGATTCACTTGCTTCCCATTTTGAAGGTCAAGAATGTGCTTTGCAAGAGTTTAGCTACCCAGGGGCACAATAA 1107 0.4354 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLRHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRREPRNRGNYSSVKQEISDANRRSSDGDSSSLSMVQENSSTSQQHQQHQQLCWPQNINMPVLPLPIVPFPYTTNQGPGFNDQDSIKKLLIKLGGRFSGDYYQPTLDGLNLQFSSQGQQVYQEQVHVGSSSSSACIVANNEVQFAQTGQYSGVDDMMQGQDGNFTPSFDEMVPSSNYSDGLEFLYNEGMIHHKITDSTITTTCDQNTTTSTTTNWVETTTSIYHHDSLASHFEGQECALQEFSYPGAQ* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1772 368 CDD SANT 71 113 IPR001005 -
Vra6g1772 368 MobiDBLite consensus disorder prediction 119 171 - -
Vra6g1772 368 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra6g1772 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Vra6g1772 368 Gene3D - 7 68 - -
Vra6g1772 368 MobiDBLite consensus disorder prediction 131 171 - -
Vra6g1772 368 CDD SANT 16 62 IPR001005 -
Vra6g1772 368 SMART sant 67 115 IPR001005 -
Vra6g1772 368 SMART sant 13 64 IPR001005 -
Vra6g1772 368 PANTHER OS09G0431300 PROTEIN 1 319 - -
Vra6g1772 368 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vra6g1772 368 Gene3D - 70 171 - -
Vra6g1772 368 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vra6g1772 368 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vra6g1772 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Vra6g1772 368 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vra6g1772 368 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1772 Vra-Chr6 34012860 34015227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1772 1 212 MYB Transcription Factor Family AT3G49690 60.930 5.65e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra6g1772 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1772 K09422 - gmx:100800290 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1772 6 34012860 34015227 Vra6g1772 6 34012860 34015227 ECH
Vra6g1772 6 34012860 34015227 Vra5g1421 5 20917672 20919485 PCT