Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1770 ATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACTGCTCCAAGTCCAAGTCCAAGGCCTAATTTCTTGTACTCTCCCCCCAGTGGTGGAAACCATAGCCATAGCCATAACCATCATCAGTTTCCAATCAACACCTTCCATCTTCAATCGGGTGGATCAGATCATTGCTTTCAGTCTGATCAAGTGGCACCACACCCTTCTGTGAAAACCGAAGCCAGCACTTCTCAGCTCCACGCTCCTATTTTCCACTACCCTTTAATGAGAGGTACCCTTCACAACAACACGACCACCACTATGCATCATCATCCCCATCAACAAGGAGGGAGTCCTACAACCTCCACCACCGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTATTCCAATCTTTTGGAAGCTTATATGGATTGCCAAAAGATAGGAGCTCCACCTGAAGTGGTGGCGCGTATGGTTGCGGCAAAGCAAGAGTTTGAGGCACGGCAAAGATCCTCAGGTGGTTCCAGGGATACTTCAAAAGACCCTGAACTCGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATTCAAGAAGCCATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTATGCAATGGACCCGTCAGGATCTTCTCTGCAGAAGATAAATGTGAAGGGGTTGGTTCATCAGATGAGGATCAAGAGAACAGTGGAGGAGAAACAGAACTTCCAGAGATTGATCCTCGAGCAGAAGATCGTGAGCTTAAAAACCACTTACTGAGAAAGTACAGTGGTTATTTGAGTAGCCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGGAAACTCCCCAAAGATGCAAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTAGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAACTGGTTCATAAACCAAAGAAAGAGGCACTGGAAACCATCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCCCAAAGTGCAACTCTCTACATGGATGGTCATTACATGGCAGATGCTCACTACCGTCTAGGGCCATGA 1149 0.443 MEEYTNNNHLSENTAPSPSPRPNFLYSPPSGGNHSHSHNHHQFPINTFHLQSGGSDHCFQSDQVAPHPSVKTEASTSQLHAPIFHYPLMRGTLHNNTTTTMHHHPHQQGGSPTTSTTEVEAIKAKIIAHPQYSNLLEAYMDCQKIGAPPEVVARMVAAKQEFEARQRSSGGSRDTSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSAEDKCEGVGSSDEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADAHYRLGP* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1770 382 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 374 - -
Vra6g1770 382 Pfam KNOX1 domain 121 163 IPR005540 GO:0003677|GO:0005634
Vra6g1770 382 ProSiteProfiles ELK domain profile. 264 284 IPR005539 GO:0003677
Vra6g1770 382 SMART KNOX2_2 171 222 IPR005541 GO:0003677|GO:0005634
Vra6g1770 382 MobiDBLite consensus disorder prediction 233 261 - -
Vra6g1770 382 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 374 - -
Vra6g1770 382 SMART HOX_1 286 351 IPR001356 GO:0003677
Vra6g1770 382 CDD homeodomain 296 348 IPR001356 GO:0003677
Vra6g1770 382 SUPERFAMILY Homeodomain-like 285 360 IPR009057 -
Vra6g1770 382 Pfam ELK domain 264 285 IPR005539 GO:0003677
Vra6g1770 382 Gene3D - 289 351 - -
Vra6g1770 382 MobiDBLite consensus disorder prediction 1 41 - -
Vra6g1770 382 SMART KNOX1_2 120 164 IPR005540 GO:0003677|GO:0005634
Vra6g1770 382 Pfam KNOX2 domain 175 221 IPR005541 GO:0003677|GO:0005634
Vra6g1770 382 SMART ELK_2 264 285 IPR005539 GO:0003677
Vra6g1770 382 ProSiteProfiles 'Homeobox' domain profile. 284 347 IPR001356 GO:0003677
Vra6g1770 382 ProSitePatterns 'Homeobox' domain signature. 322 345 IPR017970 GO:0000981|GO:0006355
Vra6g1770 382 Pfam Homeobox KN domain 304 343 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1770 Vra-Chr6 33950937 33956943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1770 55 382 Homeobox Transcription Factor Family AT4G08150 69.940 8.73e-157 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vra6g1770 KNOX2 2.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1770 - - pvu:PHAVU_001G032200g 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1770 6 33950937 33956943 Vra6g1770 6 33950937 33956943 ECH