Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1768 ATGAAGAGGTTCTCTGCGTGCTGCTTCACAAGCAGAATCTCTGAGTTTCACTCTCACAGGAAGCATAACCAATCTCAATCTCAGATCATGGCAGGAAACATGTCTGATTCAAGTGGGAGCAAGGGTGCAAATATTTTACTTAATCATGACTTTTCTAGAGGGCTGAACTCTTGGCATCTCAATTCCTGCACTGGCCATGTAATTTCAGCGTTGGGTGCTAATTGTGCTGTTATCACTGACAGAAAGGAATGCTGGCAAGGCCTTGAGCAAGACATCACAGACAGAATTTCCACTGGTTACACTTACACAGTTTTGGCTTGTGTGGGAGTATCCAGTGTTTCTCAGGGATCTAGTGATGTTCTAGCTACTTTGAAACTAGAATATCACGATTCAGCTACTAGTTACTTGTTCATTGGAAGAACTTCTGTTAATAAGGATAGCTGGGAGAAGTTGGAAGGGACGTTCTCGTTGTCAACTATGCCTGATCGGGTTGTATTTTACTTGGAAGGACCTGCTCCAGGAGTTGATCTGCTCATACGATCAGTAGAAATAAATTGTTCAACTCCGAATAATAATACCACAGGCACAACATGTGTTTCAGCGGGAGATGAGAACATCATCATCAACCCGCAATTTGACGATGGTCTGAATAACTGGTCTGGAAGAGGCTGCAAGATTGTGTTGCATGATTCCATGAATGATGGGAAAATTGTTCCCAAATCTGGGAAATTCTTTGCATCTGCAACAGAACGCACACAGAACTGGAATGGAATTCAGCAAGATATCACTGGACGCGTGCAGCGCAAACTGGCCTATGAGGTCACTGCTTTAGTTAGAATTTTTGGAAACAATGTCTCTACTGCCGATGTACGGGCTACTTTGTGGGTCCAAGCACCAGATCTTAAAGAACAGTATATAGGCATTGCAAATTTGCAGGCAACAGATAAGGATTGGGTTACTCTGCAGGGAAAATTCCTTCTAAATGGTTCTCCATCAAAAGTGGTCCTTTACTTAGAGGGCCCCCCTCCAGGCACTGACATTCTTCTCAATAATTTGGTCTTAAAGCACGCAGCTAAAATACCTCCTTCAACCCCACCAGATGTAAAGAATGTTACTTTTGGGGTTAATATAATTCAAAACAGCAATCTAGCTGATGGTACCGATGGATGGTTTCCCCTTGGCAATTGCACTTTAAGTGTTAAAAGTGGTTCACCACATATAATTCCACCAATGGCAAGAGATTCTCTTGGTCCTCATGAACTCTTAAGTGGGCGGTACATCCTAGTAACTAATCGAACACAAACATGGATGGGTCCTGCCCAGATCATCACTGATAAAGTGAAACTCTTTTTGACTTATCAAGTATCTGCTTGGGTCCGGATTGGCTCAGGATCATCAGGGCCACAGAATGTGAATGTTGCTCTTGGTGTTGACAACCAGTGGGTCAATGGAGGACAAACTGAGGTTTCTGATGACACGTGGCATGAAATAGGAGGGTCCTTCAGAATTGAAAAACAGCCATCAAAGGTTATGGTTTATGTCCAAGGTCCTGCTTCTGGTGTGGACTTAATGGTGGCTGGACTTCAAATTTTTCCTGTGGATAGACATGCAAGATTTAGATATTTAAAGATCCAAACAGATAAGATACGCAAACGTGATGTTGTACTGAAATTCTCTGGGCTGGACTCTGGCAGCTACGCTAACACCTCAGTGCAAGTTAGACAAACACAGAATGATTTCCCAATTGGAACATGCATCAGTAGATCAAACATTGACAATGAAGACTTTGTTGACTTCATGGTGAAGCATTTTAACTGGGTTGTGTTTGGAAACGAGTTAAAGTGGTATTGGACAGAGCCACAACAAGGGAACTTCAATTACAAGGATGCTGATGATCTGTTAAGCCTGTGTCAGAAGCACAATATTCAAACTCGTGGTCATTGTATCTTCTGGGATGTGGAAGGAGTGGTTCAGCAGTGGATCAAATCACTGAACAAAAACGATTTGATGACGGCTGTCCAGAACCGCCTAAACGGGCTTCTGACTCGATACAAGGGCAAGTTTAGTCACTATGATGTCAACAATGAAATGCTGCATGGTTCATTCTTTCAAGATAGGCTAGGCAAGGATATAAGGGCTAACATGTTCAAAACTGCAAACCAGCTAGACCCTTCTGCTACACTCTTTGTGAATGATTATCATGTTGAGGATGGATGTGACACCAGATCATCTCCTGATAAGTACATCCATCATATTCTTGATTTGCAAGAGCAAGGTGCCCCAGTTGGAGGAATTGGAATTCAAGGCCACATAGATAGTCCAATAGGGCCTATTGTGAGTTCTTCCCTTGACAAGTTGGGTATTCTTGGTCTGCCTATATGGTTCACTGAGCTTGATGTGTCTTCCATCAATGAATATGTCAGAGCAGATGATCTTGAAGTTATGCTGCGTGAAGCCATGGCTCATCCTGCATTAGAAGGCATAATGCTGTGGGGTTTTTGGGAGCTGTTTATGAGTAGGGACAATGCACACTTGGTGAATGCAGAAGGTGACATCAATGAGGCAGGGAAAAGGTTTCTAGCTCTAAAACAGGAGTGGCTCTCTCACAGCCGTGGCCATGTTGATGAACAAGGCCAATACAACTTCAGAGGCTTTCATGGAACATACAATGTCCAAGTTGTAACCCCATCAAAGAAAATTTCTAAGACATTTGTTCTTGACAAAGGTGACACACCAATGGTGGTATCCATTGATTTATAA 2760 0.4283 MKRFSACCFTSRISEFHSHRKHNQSQSQIMAGNMSDSSGSKGANILLNHDFSRGLNSWHLNSCTGHVISALGANCAVITDRKECWQGLEQDITDRISTGYTYTVLACVGVSSVSQGSSDVLATLKLEYHDSATSYLFIGRTSVNKDSWEKLEGTFSLSTMPDRVVFYLEGPAPGVDLLIRSVEINCSTPNNNTTGTTCVSAGDENIIINPQFDDGLNNWSGRGCKIVLHDSMNDGKIVPKSGKFFASATERTQNWNGIQQDITGRVQRKLAYEVTALVRIFGNNVSTADVRATLWVQAPDLKEQYIGIANLQATDKDWVTLQGKFLLNGSPSKVVLYLEGPPPGTDILLNNLVLKHAAKIPPSTPPDVKNVTFGVNIIQNSNLADGTDGWFPLGNCTLSVKSGSPHIIPPMARDSLGPHELLSGRYILVTNRTQTWMGPAQIITDKVKLFLTYQVSAWVRIGSGSSGPQNVNVALGVDNQWVNGGQTEVSDDTWHEIGGSFRIEKQPSKVMVYVQGPASGVDLMVAGLQIFPVDRHARFRYLKIQTDKIRKRDVVLKFSGLDSGSYANTSVQVRQTQNDFPIGTCISRSNIDNEDFVDFMVKHFNWVVFGNELKWYWTEPQQGNFNYKDADDLLSLCQKHNIQTRGHCIFWDVEGVVQQWIKSLNKNDLMTAVQNRLNGLLTRYKGKFSHYDVNNEMLHGSFFQDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTRSSPDKYIHHILDLQEQGAPVGGIGIQGHIDSPIGPIVSSSLDKLGILGLPIWFTELDVSSINEYVRADDLEVMLREAMAHPALEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSRGHVDEQGQYNFRGFHGTYNVQVVTPSKKISKTFVLDKGDTPMVVSIDL* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1768 919 SUPERFAMILY Galactose-binding domain-like 42 186 IPR008979 -
Vra6g1768 919 SMART glyco_10 613 863 IPR001000 GO:0004553|GO:0005975
Vra6g1768 919 Pfam Carbohydrate binding domain 376 519 IPR003305 GO:0016798
Vra6g1768 919 Pfam Carbohydrate binding domain 205 341 IPR003305 GO:0016798
Vra6g1768 919 Pfam Carbohydrate binding domain 43 173 IPR003305 GO:0016798
Vra6g1768 919 SUPERFAMILY Galactose-binding domain-like 203 357 IPR008979 -
Vra6g1768 919 Gene3D Glycosidases 565 875 - -
Vra6g1768 919 PANTHER - 44 183 - -
Vra6g1768 919 PANTHER - 193 919 - -
Vra6g1768 919 Pfam Glycosyl hydrolase family 10 576 833 IPR001000 GO:0004553|GO:0005975
Vra6g1768 919 PANTHER GLYCOSYL HYDROLASE 193 919 IPR044846 GO:0004553|GO:0005975
Vra6g1768 919 PANTHER GLYCOSYL HYDROLASE 44 183 IPR044846 GO:0004553|GO:0005975
Vra6g1768 919 SUPERFAMILY (Trans)glycosidases 567 870 IPR017853 -
Vra6g1768 919 SUPERFAMILY Galactose-binding domain-like 374 534 IPR008979 -
Vra6g1768 919 Gene3D - 374 531 - -
Vra6g1768 919 Gene3D - 37 186 - -
Vra6g1768 919 Gene3D - 198 357 - -
Vra6g1768 919 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 567 862 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1768 Vra-Chr6 33893233 33898943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g1768 1 919 Glycoside Hydrolase AT1G58370 66.068 0.0 1315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1768 - - gmx:100816678 1717.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1768 6 33893233 33898943 Vra6g1768 6 33893233 33898943 ECH
Vra6g1768 6 33893233 33898943 Vra5g1418 5 20884010 20885604 PCT