Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1767 ATGAAACCCTATTATAAAGCCGCTCTGAAGCTTTCAGTTGAGATGTTGAATCATGTGAGTAATAATAGTAATAGCTGCACATTGCTGTTGTTCGTAGTGAGGCACTACTCTAGAATTCAACCCCCAAGGCCTGTTTCTGTTAAACCAGTAATCAGAGTATCTAACAATATTGCTCGTCTGGATGCTCCTAAAGAAGGTCCAAAACCCAGACAGCTGTTATCATTGCCTCCTTTTCCTGGTCACCCCTTGCCTGCCAAGAGCTCAAATAGTGGTCCTGGACAACGTGATTATGTTACTGCCGTCAATTGGATTAAGTATTACTTCAAGGGGACATGGGGTTCAGTCATTGAATCCCATTTCAGAGAGGGTCTTGTGCAAATGGAGGGCCTAGTTGCTGCTGACTCTTATACTCGGAAAGAAACTCTGATGAAATCCATGCGAAAGATTAGACCTAATGAAGTGATGGAACATGGTGCCAGAGTTCACGTTCCTGTATCAATTGCTGAGACTAGGATTTCCAAAAGATATGATGCCATTCCTTGTGGAACACTATATCCAAATGCTGACGAAATTAAGTATCTGCAAAGGCTTGTGATTTACAAGGACTCAGCTATTATTGTGCTTAATAAACCTCCAAAGTTGCCGGTTAAGGGGAGTTTACCAGTTCACAATAGCATGGACGCATTGGCAGCTGCTGCACTGTCCTATGATTATGACGAGGGCCCTAAACTAGTTCACCGTCTTGACAGAGAGACCAGTGGCATCCTTTTACTGGGGAGAACTAAAGATAGTGCATCTCATCTCCAATGGTTGTTCACTAACATTAACAATGCCAAATCTTCTTGTAAGGCTTGGAATGATGCGTGTGAAGCTACGTATCAGAGGTATTGGGCATTGGTCATAGGGACTCCCAAGGAGAAGGAAGGCGTAATTCATGCTCCTCTTTCTAAGGTGCTTCTAAATGATGGGAAGACTGAGAGGATAATACTAGCTCACCATTCAAGTGTAGAACCACGCCAAGAGGCTGTAACTGAGTATCGGGTGCTTGGTCCAAAGATAAATGGATGCTCGTGGGTGGAGCTACGTCCTCTTACTTACAGGAAACATCAGTTGCGCGTCCATTGTGCTGAAGCACTTGGCACACCAATAGTGGGTGACTACAAGTATGGTTGGTTTGTGCACAGCCGATGGAAACAAATGCCGCGAATCGATATCGAGCCAACAACTGGAAAACCATACAAGTTGCGTAGGCCAGAAGGCCTTGATGTTCAGAAGGGAAGTGTTTTATCGAAGGTTCCTTTATTGCATCTTCACTGCAGAGAACTTGTGCTCCCCAACATAGCTAAGTTTCTACAAGTTTTGAACAATAGTTCAGAAGAACTACACAGTTCACTCAGTCAGCAGCCTGATGTTCTTCGATTTGTGGCAACAATGCCATCCCATATGAGAATTAGTTGGAATCTTATGTCATCGTATTTAGTCTGA 1485 0.4377 MKPYYKAALKLSVEMLNHVSNNSNSCTLLLFVVRHYSRIQPPRPVSVKPVIRVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPAKSSNSGPGQRDYVTAVNWIKYYFKGTWGSVIESHFREGLVQMEGLVAADSYTRKETLMKSMRKIRPNEVMEHGARVHVPVSIAETRISKRYDAIPCGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGILLLGRTKDSASHLQWLFTNINNAKSSCKAWNDACEATYQRYWALVIGTPKEKEGVIHAPLSKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRIDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLQVLNNSSEELHSSLSQQPDVLRFVATMPSHMRISWNLMSSYLV* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1767 494 SUPERFAMILY Pseudouridine synthase 190 447 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra6g1767 494 CDD PseudoU_synth_RluA_like 205 401 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra6g1767 494 PANTHER RNA PSEUDOURIDINE SYNTHASE 3, MITOCHONDRIAL 27 491 - -
Vra6g1767 494 MobiDBLite consensus disorder prediction 61 93 - -
Vra6g1767 494 Pfam RNA pseudouridylate synthase 205 376 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra6g1767 494 Gene3D Pseudouridine synthase 189 452 - -
Vra6g1767 494 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 27 491 - -
Vra6g1767 494 ProSitePatterns Rlu family of pseudouridine synthase signature. 245 259 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g1767 Vra-Chr6 33886787 33892664 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1767 - - pvu:PHAVU_001G032500g 912.909