Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g1764 ATGGCTTCTTCTTCTCCTCCTTCTCCCTCTTTTCTCACACACCTTCCTCTTCATCCTTCTTCTTCCCCTCACCCAGGTGAGAAGCGCCTAGTGGAAGATGAATCTCCTGTTCCGGTTCACATCGTGACGCTGGCCTCGCAACTGCCCGTGGAGTTCCTTGAACCCTCGCCTCAATCGGAGCTCGTCATTGGCTTTGATTGCGAGGGTGTTGACTTGTGTCGCAAAGGCACTCTCTGCATAATGCAGCTTGCGTTTCCTGATGCTGTGTACTTGGTTGATGCGATTGAAGGGGGAGAAGAGCTTATCAAAGCGTGTAAGCCTGCACTTGAATCTAGTTACATCACAAAAGTGATTCATGATTGCAAACGGGACAGTGAGGCACTCTTCTTTCAGTTTGACATCAAGTTGAACAATGTGGTGGATACTCAGATTGCTTACTCACTTATAGAGGATCAAGAAGGACGAAAGAGATTGCGAGATGACTACATTTCATTTGTTGGCCTCCTTGCTGATCCACGTTATTGTGGCATATCATATGTTGAGAAGGAAGAAGTTCGTGACCTCCTTCGACAGGACCCTAAGTTCTGGACACACCGACCATTATCTGAACTAATGGTCCGTGCTGCTGCTGATGATGTTCGTTTTCTTCTCTACATTTATCACCAAATGATGGAGAAATTAAATGAGCGGTCTTTATGGTATCTTGCAGTTCGTGGTGCATTGTATTGCCGTTGTTTCTGTGTGAACAGTAACAACTTTGCTGATTGGCCATCTCTACCTTCGATACCAGATAGCTTGAATGCTGATGGTAATGGTCCCGAGGAGGAAATTCTTTCAGTTCTTGATGTTCCCCCTGGAAAGATGGGACGTGTTATTGGGAAAAGAGGGGCGACAATTTTGTTAATCAAGGCTTCTTGCAATGCGGAAATTCACACCGGAGGTCCCAAGGGCCCACCTGACAAGGTCTTTATCATCGGACCAGTGAAGGAAGTGAGGAAAGCCGAGGCTATGTTACGGGGTAGAATCTTGGATATGTAG 1038 0.4653 MASSSPPSPSFLTHLPLHPSSSPHPGEKRLVEDESPVPVHIVTLASQLPVEFLEPSPQSELVIGFDCEGVDLCRKGTLCIMQLAFPDAVYLVDAIEGGEELIKACKPALESSYITKVIHDCKRDSEALFFQFDIKLNNVVDTQIAYSLIEDQEGRKRLRDDYISFVGLLADPRYCGISYVEKEEVRDLLRQDPKFWTHRPLSELMVRAAADDVRFLLYIYHQMMEKLNERSLWYLAVRGALYCRCFCVNSNNFADWPSLPSIPDSLNADGNGPEEEILSVLDVPPGKMGRVIGKRGATILLIKASCNAEIHTGGPKGPPDKVFIIGPVKEVRKAEAMLRGRILDM* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g1764 345 CDD Egl_like_exo 52 247 - -
Vra6g1764 345 Pfam 3'-5' exonuclease 60 227 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vra6g1764 345 Gene3D K Homology domain, type 1 266 343 IPR036612 GO:0003723
Vra6g1764 345 CDD KH-I 281 338 - -
Vra6g1764 345 SMART 35exoneu6 39 228 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vra6g1764 345 PANTHER - 12 343 - -
Vra6g1764 345 SMART kh_6 275 343 IPR004087 GO:0003676
Vra6g1764 345 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 272 343 IPR036612 GO:0003723
Vra6g1764 345 Pfam KH domain 281 339 IPR004088 GO:0003723
Vra6g1764 345 Gene3D - 6 243 IPR036397 GO:0003676
Vra6g1764 345 MobiDBLite consensus disorder prediction 1 31 - -
Vra6g1764 345 SUPERFAMILY Ribonuclease H-like 30 249 IPR012337 -
Vra6g1764 345 ProSiteProfiles Type-1 KH domain profile. 276 338 - -
Vra6g1764 345 MobiDBLite consensus disorder prediction 1 17 - -
Vra6g1764 345 PANTHER EGALITARIAN, ISOFORM B 12 343 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g1764 K18740 - gmx:100810098 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1764 6 33847924 33854838 Vra6g1764 6 33847924 33854838 ECH