Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1427 ATGAAGGGCATGGACGAGAGTAACACCGATGATGGAAGCAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAACATGGAGGTTACTTCAGCAGCCACTATTCCCAACCCCACTGTTCCGACAACCTTCTACATGTCCTCCCCTCACATTTCCAGCTCAGGAATCTGCTACGGTGTCGGGGGAAATGGTAACTTCCATTCTCCTCTTACCGTTATGCCTATCAAGTCAGATGGGTCACTTTGTATCTTGGAAGCTCTCAATAGATCACAATCGCAAGTGATGGCACCGAATTCTACGCCTAAATTGGAGGACTTTCTTGGTGGTGCAACTATGGGAACTCACGAATATGGGAGTCACGAGAGAGGGGCAAATGCAATGGCTCTGAGTCTAGACAGCATCTACTATAGCACCCAAAATGCTCAGGCACAACCCAACAGAGACACTCTCTCAGAATCCTTCAGGCAACAAGGGCATATGAACGTCCAAACGCACCCTTATTACTCAGGACTTGGTTGCCACGGGATGTATCAAGCACAGATGGAGGATGAAGCAACGAAGGAAGCGCACGCATCAGTTTGCAGCTCCCTAATGCCTCAAATGACAGAAGATAGTTTGAAAAACTGGATGGCTTCAAGGGAATATTCAACTCATCAGCAGGTTTTGGAGCAGGAAATGAACTGTGGAATGGGGAATGAAGGAAGTGGCATGTCTCTTGGAACTGTGGGGTGTGGCGAGTTACAGTCACTGAGTTTATCGATGAGTCCTGGTTCTCAGTCTAGTTGCGTCACTGCACCTTCTGGGCCTGATTCTGTGGCTGTGGATGCAAAGAAGAGAGGGCATGTAAAGTTGGGTCAAAAGCAACCAGTGCATAGGAAATCTATTGACACATTTGGGCAGAGAACCTCTCAGTATAGAGGTGTCACAAGGCATAGATGGACTGGTAGGTATGAAGCGCATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAGACTAGGAAAGGAAGACAAGTATATTTGGGGGGTTACGACATGGAAGAGAAAGCTGCAAGAGCCTATGATCTCGCGGCTCTTAAGTACTGGGGACCTTCCACGCATATAAATTTTTCGATTGAAAATTACCATGTTGAACTCGAAGAAATGAAGAGCATGAGCAGGCAAGAATACGTTGCGCACTTAAGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCTTCAATATACCGAGGGGTCACAAGGCACCACCAACATGGAAGATGGCAAGCAAGGATAGGTAGAGTTGCTGGGAACAAGGACCTATACCTTGGGACATTCAGCACACAGGAGGAAGCAGCAGAAGCATACGATGTAGCCGCAATCAAATTTCGCGGCGCAAATGCAGTCACGAACTTTGACATTTCAAGATACGATGTGGAGAGAATCATGGCGAGTATTAATCTTCTCGCCGGTGAGCTTGCAAGGAGAAATAAAGACAATGATCCAAGAAACGAGGGCAGGGAGTGCAGTATGAAAAACAATAACAAGGGTGTGATGACAAGTGAAAAGCAGGAGGAAATAGTTGAAGGTAGAAACAGCAATGAAAACGATCCAGAGTGGAAAATGGTTTTGTTTAATCAGGCTTCACAGCAGCAACAGTCAAATGGCAGTGAGGAAAAAATAATGAACTGCGGAAATTATAGAAACAGTGCATTCTCTGGGGCCCTACAAGATCTCATTGGGATTGATTCGGTGGAGGAGTGTAGCAAAATAGGAACTCATTTTTCAAACGCGTCCTCGCTGGTGACCAGTTTAAGCAGCTCAAGAGAGGCTAGTCCTGAGAAAACGGGTCCCTCGCTTCTGTTTCCAAAGCCCTCCATGGAAACAAAGATTGTGAACCCCATTAGTACTAGTGTTACATCTTGGTTACCCTCACCAACGGTTGAAATCAGGCCACCTCCTGCTATTTCTTTGTCTCACTTGCCAGTTTTTGCTGCTTGGACTGATACTTAA 1989 0.4625 MKGMDESNTDDGSNHNWLGFSLSPHMNMEVTSAATIPNPTVPTTFYMSSPHISSSGICYGVGGNGNFHSPLTVMPIKSDGSLCILEALNRSQSQVMAPNSTPKLEDFLGGATMGTHEYGSHERGANAMALSLDSIYYSTQNAQAQPNRDTLSESFRQQGHMNVQTHPYYSGLGCHGMYQAQMEDEATKEAHASVCSSLMPQMTEDSLKNWMASREYSTHQQVLEQEMNCGMGNEGSGMSLGTVGCGELQSLSLSMSPGSQSSCVTAPSGPDSVAVDAKKRGHVKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFSIENYHVELEEMKSMSRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGANAVTNFDISRYDVERIMASINLLAGELARRNKDNDPRNEGRECSMKNNNKGVMTSEKQEEIVEGRNSNENDPEWKMVLFNQASQQQQSNGSEEKIMNCGNYRNSAFSGALQDLIGIDSVEECSKIGTHFSNASSLVTSLSSSREASPEKTGPSLLFPKPSMETKIVNPISTSVTSWLPSPTVEIRPPPAISLSHLPVFAAWTDT* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1427 662 CDD AP2 304 370 IPR001471 GO:0003700|GO:0006355
Vra5g1427 662 SUPERFAMILY DNA-binding domain 406 467 IPR016177 GO:0003677
Vra5g1427 662 Pfam AP2 domain 407 457 IPR001471 GO:0003700|GO:0006355
Vra5g1427 662 Pfam AP2 domain 305 363 IPR001471 GO:0003700|GO:0006355
Vra5g1427 662 SMART rav1_2 305 377 IPR001471 GO:0003700|GO:0006355
Vra5g1427 662 SMART rav1_2 407 471 IPR001471 GO:0003700|GO:0006355
Vra5g1427 662 SUPERFAMILY DNA-binding domain 304 373 IPR016177 GO:0003677
Vra5g1427 662 ProSiteProfiles AP2/ERF domain profile. 407 465 IPR001471 GO:0003700|GO:0006355
Vra5g1427 662 MobiDBLite consensus disorder prediction 489 515 - -
Vra5g1427 662 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 660 - -
Vra5g1427 662 PRINTS Ethylene responsive element binding protein signature 306 317 IPR001471 GO:0003700|GO:0006355
Vra5g1427 662 PRINTS Ethylene responsive element binding protein signature 447 467 IPR001471 GO:0003700|GO:0006355
Vra5g1427 662 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 13 660 - -
Vra5g1427 662 Gene3D AP2/ERF domain 407 467 IPR036955 GO:0003700|GO:0006355
Vra5g1427 662 Gene3D AP2/ERF domain 304 373 IPR036955 GO:0003700|GO:0006355
Vra5g1427 662 ProSiteProfiles AP2/ERF domain profile. 305 371 IPR001471 GO:0003700|GO:0006355
Vra5g1427 662 CDD AP2 406 467 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1427 Vra-Chr5 21000000 21004031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1427 10 491 AP2-EREBP Transcription Factor Family AT4G37750 51.367 1.93e-151 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vra5g1427 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1427 K09285 - gmx:100787223 1080.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1427 5 21000000 21004031 Vra5g1427 5 21000000 21004031 ECH
Vra6g1781 6 34131287 34136004 Vra5g1427 5 21000000 21004031 PCT