Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1421 ATGGGAAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCGCCGGAAGAAGATGCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGAGGCAACTGGATCGCTTTGCCACAGAAGATTGGCCTCAAACGATGTGGCAAGAGTTGCCGTCTCAGGTGGCTAAACTACCTCCGCCCTAACATCAAGCACGGTGGCTTCTCTGAAGAAGAAGATAACATCATTTGCAGCCTCTACGTTAGCATTGGAAGCAGGTGGTCGGTGATTGCGGCACAATTGCCAGGAAGAACTGATAACGACATAAAGAATTACTGGAACACGAGGCTGAAGAAGAAGCTTTTAGGGAAGCATCGTAAGGAACTGCAGGCACGTAACAAAGGAAACGGTGTCGTTAAGCAGGAGAACAATTCCTCACTCTTGCTTCAGGAAAACATTGTTCAACAACAGCCTAGTTGGCCACAGATTCCGGCGCCGCCACTTTCACCGTACACAAGTCAAAATCCAAGTTTCAACGACCAAGACTCTATTAGAAAACTTCTAATCAAGCTTGGAGGGAGATTCTCCGATGATTATCAACCCATAGGGCTGAATGTTCAGTTTCCACAGGGTTCTCTCTCATCATCAACACAACAAATTCAAGAGGAGCAAGTCCATGTTAGCTCTTCTGGGTGCATGAACTCTATTGCAAACAGCCAAGTACAATTTGGTCAGAGTAATGAGTACTGTTCTGAGTTGGTGCAAGGAGAAGTGAGTTTCAGTTCCGCAGCTATTGGGGAAATGGTTTCTACTAATGATTATTCTCAAAGGTTATTAGGAGGGTTGGAGTTCTTATATGGAGAGGAAATGATTAGCGATAAGATAATGGGTGGTTGTGCATCTTCATGTTGTGGGCAAAGTACTAATTGGAGCGAGACAAGTTCTTTGATTTATCCTCCTCTTGTTGCTTCGAGTTTCGAGGGTGTGAGGCAAGAGATTCCACGAGAAAATGCTTTTCAAGAGTTGAGCTACCCATAG 1026 0.4532 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKELQARNKGNGVVKQENNSSLLLQENIVQQQPSWPQIPAPPLSPYTSQNPSFNDQDSIRKLLIKLGGRFSDDYQPIGLNVQFPQGSLSSSTQQIQEEQVHVSSSGCMNSIANSQVQFGQSNEYCSELVQGEVSFSSAAIGEMVSTNDYSQRLLGGLEFLYGEEMISDKIMGGCASSCCGQSTNWSETSSLIYPPLVASSFEGVRQEIPRENAFQELSYP* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1421 341 CDD SANT 71 113 IPR001005 -
Vra5g1421 341 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vra5g1421 341 PANTHER OS09G0431300 PROTEIN 1 329 - -
Vra5g1421 341 PANTHER TRANSCRIPTION FACTOR MYB36-LIKE 1 329 - -
Vra5g1421 341 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vra5g1421 341 Gene3D - 70 143 - -
Vra5g1421 341 SMART sant 13 64 IPR001005 -
Vra5g1421 341 SMART sant 67 115 IPR001005 -
Vra5g1421 341 CDD SANT 16 62 IPR001005 -
Vra5g1421 341 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vra5g1421 341 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vra5g1421 341 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vra5g1421 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vra5g1421 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vra5g1421 341 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1421 Vra-Chr5 20917672 20919485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1421 1 186 MYB Transcription Factor Family AT3G49690 66.169 3.28e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra5g1421 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1421 K09422 - gmx:100790407 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1421 5 20917672 20919485 Vra5g1421 5 20917672 20919485 ECH
Vra6g1772 6 34012860 34015227 Vra5g1421 5 20917672 20919485 PCT