Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1418 ATGGGAGACTTAACGATGATCAACGAAGGAAACCACTCTCAGCAGTTCGTTGATGAAAACATCATAGTAAATCAACAGTTTGATGATGGCCTGAATAGTTGGTCTGGAAGAGGCTGCAAGATTGCCTTACATGACTCCATGGGAGATGGGAAGATCCTTCCGAAGTCTGGCAAATTCTTTGCATCTGCAACAGAACGTACCAAAAGCTGGAACGGGATTCAGCAGGAGATCACAGGAAGAGTGCAGCGCAAGCTTGCCTATGAGGTTACTACATTAGTTCGGATATTTGGGAACAGTGTCACCACTTCTGATGTAAGGGCTACTTTGTGGGTTCAAGCACCAGATCTTCGCGAGCAGTATATAGACATTGCCAAGTTAGTTCCATCTTAA 390 0.4487 MGDLTMINEGNHSQQFVDENIIVNQQFDDGLNSWSGRGCKIALHDSMGDGKILPKSGKFFASATERTKSWNGIQQEITGRVQRKLAYEVTTLVRIFGNSVTTSDVRATLWVQAPDLREQYIDIAKLVPS* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1418 129 PANTHER ENDO-1,4-BETA-XYLANASE A-LIKE PROTEIN 17 125 - -
Vra5g1418 129 PANTHER GLYCOSYL HYDROLASE 17 125 IPR044846 GO:0004553|GO:0005975
Vra5g1418 129 Pfam Carbohydrate binding domain 20 111 IPR003305 GO:0016798
Vra5g1418 129 SUPERFAMILY Galactose-binding domain-like 18 125 IPR008979 -
Vra5g1418 129 Gene3D - 16 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1418 Vra-Chr5 20884010 20885604 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1418 18 126 Glycoside Hydrolase AT1G58370 69.725 8.19e-50 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1418 - - vra:111241679 262.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1768 6 33893233 33898943 Vra5g1418 5 20884010 20885604 PCT