Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1408 ATGAATCGTTTCCCGATCATTTTTGTCGTAGCCACCCTCATCACCCTTGTCTCCGGTGGCCGTGACGAGATTCTCCGAATGCCCTCCGAAGCTTCCAGGTTCTTCCAAGCACCTGCTACCGATGAGAATGACGAGGGAACGAGGTGGGCCGTTTTAATTGCCGGATCCAATGGCTACTGGAATTACAGACACCAGTCTGATGTTTGCCATGCGTATCAACTGCTGAGGAAAGGTGGTCTGAAAGAAGAAAATATTGTGGTATTTATGTATGATGACATTGCTTTCAATGAAGAGAACCCACGGCCTGGAGTCATTATTAACAGCCCTCATGGAAATGATGTTTACAAGGGAGTCCCAAAGGATTACGTTGGTGAAGATGTCACTGTTAACAATTTTTTTGCTGCTATACTTGGAAATAAATCAGCTCTTACCGGTGGTAGCGGGAAGGTTGTCGATAGTGGTCCCAATGATCATATATTTATATACTATTCTGATCATGGCGGTCCAGGAGTGTTAGGGATGCCTACTAATCCATACATGTATGCCTCCGATTTGATTGAAGTCTTAAAGAAAAAACATGCTTCTGGAACGTATAAAAGCCTAGTATTTTATCTAGAGGCATGTGAATCTGGGAGTATCTTTGAAGGTCTTCTTCCTGAAGGGCTGAATATCTATGCAACAACAGCAGCTAATGCAGAAGAAAGCAGTTGGGGAACATATTGTCCCGGGGAATATCCTAGTCCCCCCGCTGAATATGAAACCTGCCTGGGTGACCTGTACAGTGTTGCTTGGATGGAAGATAGTGACATTCACAATTTGCGAACAGAAACTTTACATCAACAATTTGAATTGGTGAAACAAAGGACTATCAATGGAAATTCAGCCTATGGTTCCCACGTGATGCAGTATGGTGACATAGGGCTTAGCAAGAACAATCTCTCCTTATATTTGGGTACAAATCCTGCTAATGATAATTTTCCTTTTCTGGAGAAAAACTCGTTGGTGCCACCTTCAAAAGCAGTCAACCAACGTGATGCAGATCTTGTCCATTTCTGGGATAAGTTCCGCAAAGCTCCTTTGGGTTCTTCTAGGAAATCTGTAGCTCAGAAACAAATTCTAGAAGCAATGTCTCACAGAATGCATATAGACGACAGCGTGACACTTATTGGAAAGCTGTTATTTGGCATTGAAGAGGGTCCAGAACTGCTTAGCAGTGTTAGACCTGCTGGGCAACCACTTGTTGATGACTGGGACTGCCTTAAAACACTGGTTAGGACTTTTGAGACACATTGTGGATCCCTGTCTCAGTATGGGATGAAACATATGAGGTCCTTTGCAAACCTCTGCAATGCTGGAATACGGAAAGAGCAAATGGCCGAGGCCTCAGCACAAGCATGCGTCAGTATTCCTGCAAGTCCCTGGAGTTCTTTGAGCAGCGGTTTCAGTGCATAA 1452 0.4408 MNRFPIIFVVATLITLVSGGRDEILRMPSEASRFFQAPATDENDEGTRWAVLIAGSNGYWNYRHQSDVCHAYQLLRKGGLKEENIVVFMYDDIAFNEENPRPGVIINSPHGNDVYKGVPKDYVGEDVTVNNFFAAILGNKSALTGGSGKVVDSGPNDHIFIYYSDHGGPGVLGMPTNPYMYASDLIEVLKKKHASGTYKSLVFYLEACESGSIFEGLLPEGLNIYATTAANAEESSWGTYCPGEYPSPPAEYETCLGDLYSVAWMEDSDIHNLRTETLHQQFELVKQRTINGNSAYGSHVMQYGDIGLSKNNLSLYLGTNPANDNFPFLEKNSLVPPSKAVNQRDADLVHFWDKFRKAPLGSSRKSVAQKQILEAMSHRMHIDDSVTLIGKLLFGIEEGPELLSSVRPAGQPLVDDWDCLKTLVRTFETHCGSLSQYGMKHMRSFANLCNAGIRKEQMAEASAQACVSIPASPWSSLSSGFSA* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1408 483 PANTHER HEMOGLOBINASE FAMILY MEMBER 6 482 IPR001096 GO:0006508|GO:0008233
Vra5g1408 483 Gene3D - 343 470 IPR046427 -
Vra5g1408 483 PRINTS Hemoglobinase (C13) cysteine protease signature 49 73 IPR001096 GO:0006508|GO:0008233
Vra5g1408 483 PRINTS Hemoglobinase (C13) cysteine protease signature 74 103 IPR001096 GO:0006508|GO:0008233
Vra5g1408 483 PRINTS Hemoglobinase (C13) cysteine protease signature 121 136 IPR001096 GO:0006508|GO:0008233
Vra5g1408 483 PRINTS Hemoglobinase (C13) cysteine protease signature 149 168 IPR001096 GO:0006508|GO:0008233
Vra5g1408 483 PRINTS Hemoglobinase (C13) cysteine protease signature 198 214 IPR001096 GO:0006508|GO:0008233
Vra5g1408 483 PANTHER VACUOLAR-PROCESSING ENZYME 6 482 - -
Vra5g1408 483 PIRSF AE 1 483 IPR043577 GO:0004197|GO:0051603
Vra5g1408 483 Gene3D - 46 342 - -
Vra5g1408 483 PIRSF Legumain 1 483 IPR001096 GO:0006508|GO:0008233
Vra5g1408 483 Pfam Peptidase C13 family 48 318 IPR001096 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1408 Vra-Chr5 20795749 20801664 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1408 K01369 - gmx:100791675 903.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g1755 6 33756290 33762253 Vra5g1408 5 20795749 20801664 PCT