Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00485 ATGACTGTTGAAGCTCACCATCTCAACATTTTACCTTCTCAACAACGCCTTCTCAATCGGAACATGAACACAAACTCCACCGACACAAATTTAATGAACATTTACAACCACTCGTCAGAGAATCTTATTCCAACTCCCACTCCGTCATACAACAACCTCTTCTTAGAAGATAACCGCCATCAAAATATCACCGACAGTGACAGTAACAGCAACAGTAACATTGTCTCGTTGTACCCAAGAGACTGGATCAATAACTATCATTTCGCATCTTACAAGAATAGTCTAAATGTACACCACCAAAACACCGACACCGACATCGACAACCTCATATCTCAACAGAAGTTTAGAGTGGAACTGGAAGAAAAAAGAAAGAGAGAAATAAAGATGATAATTGAAGCTATAGAAATTGAAATGACGAAGAAAATGAAAGCTAAAGAACAAGAGATAGAAAAACTCGAAAGAATGAACATGATCCTGGAAGAAAGAGTGAAAACACTTGTCATGGAGAATCAAATATGGCGAGAATTAGCACAAAACAACGAAGCCACAGTTAATGCCCTCCGGAACAATCTGGAACAAATACTTAGGGAGATGAAGAACGAGGGAGCGGCGGAGCAGGATGGAGAGTCGTGTTGCGAAAATGGGTGGCGCACGCTAGTGTTATGTGCGCAGGATAAAGAAGATGGTGAAAGTGAAAAGAAGAGATGGTGCAGGAATTGTGGAGAAAGAGTATCGTGCGTGCTCATCTTGCCTTGCAGACACCTCTGTCTGTGTGATTTATGTGTGGCTACAGTTCATATTTGTCCTATCTGTCAATCTTTCAAAAACAGTACTCTAAATATTAATTTGAGTTAA 855 0.4023 MTVEAHHLNILPSQQRLLNRNMNTNSTDTNLMNIYNHSSENLIPTPTPSYNNLFLEDNRHQNITDSDSNSNSNIVSLYPRDWINNYHFASYKNSLNVHHQNTDTDIDNLISQQKFRVELEEKRKREIKMIIEAIEIEMTKKMKAKEQEIEKLERMNMILEERVKTLVMENQIWRELAQNNEATVNALRNNLEQILREMKNEGAAEQDGESCCENGWRTLVLCAQDKEDGESEKKRWCRNCGERVSCVLILPCRHLCLCDLCVATVHICPICQSFKNSTLNINLS 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00485 284 Coils Coil 177 204 - -
Vivi7g00485 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 283 IPR013083 -
Vivi7g00485 284 ProSiteProfiles Zinc finger RING-type profile. 237 272 IPR001841 -
Vivi7g00485 284 Pfam Zinc finger, C3HC4 type (RING finger) 235 273 - -
Vivi7g00485 284 CDD mRING-HC-C3HC5_CGRF1-like 237 271 - -
Vivi7g00485 284 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 80 280 IPR017066 -
Vivi7g00485 284 Coils Coil 135 169 - -
Vivi7g00485 284 PIRSF SBP1_RNase_bind 2 284 IPR017066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00485 Vivi-Chr7 28332874 28334044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00485 237 273 Miscellaneous Gene Families AT4G39050 43.243 2.51e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00485 K19042 - gmx:100787292 203.756
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g00485 7 28332874 28334044 Vivi7g00485 7 28332874 28334044 ECH