Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi7g00070 ATGGATAATCGCATCTACGCTTCTTACAGCCCTACAAACTACACTGTATCCGGAGCCCCCTCCACATCCCCGACCCGACTTTACAACCCGGACACTATGTTCCTCGCTCACTATCGCCGCACCGCCGAAGCTGCCGCCGCCGCCGCCGCCGTCGACATTGCTCCTCCTGGTGTTTCTTCTACCGCTAACTTCTTTTCTCACTCTAACCCTTGGGCTGCCGCTTTCACCGCCGCTAATGTTGCCTCTGCTCCACTTGACCTTAAACGCTCTTCTGACGCGCTCTACCATCCAACTATTTTGAGTACAATTGGGCAAAACGAAGCTTGGTACACTACAAACTCACTGCCCAAGCGCCCTAGATACGAAACCGGAAGCACTCTGCCTATTTATCCTCACAGGCCAGGAGAGAGGGATTGTGCCCACTATATGCTAACAAGAACCTGTAAATTCGGAGAGAGCTGCAAGTTTGATCATCCTATTTGGGTTCCTGATGGTGGAATCCCATATTGGAAAGAGGTTCCAAATAATGTTCCAAGTGAAACTCTTCCCGAGAGACCTGGAGAGCCAGATTGTCCATTCTTTCTGAAAACTCAAAAATGCAAGTTTGGTTCAAAATGCAAATTTAATCACCCAAATGTTCCATCTGAAAAGGCCGATGTTTCTGGCTTACCCGAGAGGCCACTAGAGCCCCCTTGTGCGTTCTACTTGAAAACTGGAAAATGTAAATATGGTGTTGAATGCAAATTCCATCACCCCAAGGATATCCAGATTCAGTCCTCTGATGAATTGAGCCGTACCACTGAGCAGACACAAACAAATTCTTCTGTGTTTGACGGGGCAATAGGAGATGCACAGCCAACTAAGCCTCTTATTTCTCCGCTGTTGCATAATAGCAAAGGGCTTCCCGTGAGACAGGGGGGAGTGGATTGTCCATTCTACATGAAAACTGGAAGTTGCAAGTTCGGTGCCAGTTGCCGCTACAATCATCCAGACATGAATGCAATTAATCCTGCTATGTCGGCATTGGCCCCATCTGTTTTGACATCCTCAGCTGCTACTAATCTTAACATTGGAGCTATTAATCCAGCTGCATCTTTTTATCAAGCTTTTGATCCAAGGCTTTCAAATCCAATGGCTCAGGTGGGAATGACAGAGAGTATCTATCCTCAGCGCCCTGGACAGATTGAATGTGATTTCTTTATGAAAACCGGCATATGTAAATTTGGGGAAAGATGCAAGTACCACCATCCTGTTGACCGTTCAACATCATCGCTGTCAAAACCGTCATCAAATGTTAAACTCACTCCTGCAGGGTTACCAAGAAGAGAGGATGTTGAGCTGTGTCCATATTATTTGAAAACTGGCACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCATCCACCACCTGGAGAAGTGATGGAGATGGCCAAGTCACAAGGAACTTCTACGGTCAATGAAGATGAAGATGAAGATGAAGAAGAAGAAAAAGAAGAAGAAAAAGAAGAAGAAACCAACGTAAATGTTGCTGGTTCTGCCCCAGAATAA 1548 0.4625 MDNRIYASYSPTNYTVSGAPSTSPTRLYNPDTMFLAHYRRTAEAAAAAAAVDIAPPGVSSTANFFSHSNPWAAAFTAANVASAPLDLKRSSDALYHPTILSTIGQNEAWYTTNSLPKRPRYETGSTLPIYPHRPGERDCAHYMLTRTCKFGESCKFDHPIWVPDGGIPYWKEVPNNVPSETLPERPGEPDCPFFLKTQKCKFGSKCKFNHPNVPSEKADVSGLPERPLEPPCAFYLKTGKCKYGVECKFHHPKDIQIQSSDELSRTTEQTQTNSSVFDGAIGDAQPTKPLISPLLHNSKGLPVRQGGVDCPFYMKTGSCKFGASCRYNHPDMNAINPAMSALAPSVLTSSAATNLNIGAINPAASFYQAFDPRLSNPMAQVGMTESIYPQRPGQIECDFFMKTGICKFGERCKYHHPVDRSTSSLSKPSSNVKLTPAGLPRREDVELCPYYLKTGTCKFGATCKFDHPPPGEVMEMAKSQGTSTVNEDEDEDEEEEKEEEKEEETNVNVAGSAPE 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi7g00070 515 MobiDBLite consensus disorder prediction 258 279 - -
Vivi7g00070 515 SUPERFAMILY CCCH zinc finger 190 211 IPR036855 GO:0046872
Vivi7g00070 515 MobiDBLite consensus disorder prediction 470 515 - -
Vivi7g00070 515 ProSiteProfiles Zinc finger C3H1-type profile. 133 161 IPR000571 GO:0046872
Vivi7g00070 515 FunFam Zinc finger CCCH domain-containing protein 37 92 170 - -
Vivi7g00070 515 SMART c3hfinal6 185 212 IPR000571 GO:0046872
Vivi7g00070 515 SMART c3hfinal6 133 160 IPR000571 GO:0046872
Vivi7g00070 515 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Vivi7g00070 515 SMART c3hfinal6 391 418 IPR000571 GO:0046872
Vivi7g00070 515 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Vivi7g00070 515 SMART c3hfinal6 442 469 IPR000571 GO:0046872
Vivi7g00070 515 Coils Coil 485 507 - -
Vivi7g00070 515 SUPERFAMILY CCCH zinc finger 309 331 IPR036855 GO:0046872
Vivi7g00070 515 MobiDBLite consensus disorder prediction 259 279 - -
Vivi7g00070 515 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Vivi7g00070 515 ProSiteProfiles Zinc finger C3H1-type profile. 391 419 IPR000571 GO:0046872
Vivi7g00070 515 PANTHER PROTEIN PHOSPHATASE RELATED 293 478 - -
Vivi7g00070 515 Gene3D - 390 484 - -
Vivi7g00070 515 Gene3D - 133 222 - -
Vivi7g00070 515 Gene3D - 225 342 - -
Vivi7g00070 515 FunFam zinc finger CCCH domain-containing protein 37 389 483 - -
Vivi7g00070 515 ProSiteProfiles Zinc finger C3H1-type profile. 442 470 IPR000571 GO:0046872
Vivi7g00070 515 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Vivi7g00070 515 SUPERFAMILY CCCH zinc finger 231 254 IPR036855 GO:0046872
Vivi7g00070 515 MobiDBLite consensus disorder prediction 486 502 - -
Vivi7g00070 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 230 253 IPR000571 GO:0046872
Vivi7g00070 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 444 469 IPR000571 GO:0046872
Vivi7g00070 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 135 159 IPR000571 GO:0046872
Vivi7g00070 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 308 330 IPR000571 GO:0046872
Vivi7g00070 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 187 211 IPR000571 GO:0046872
Vivi7g00070 515 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 394 417 IPR000571 GO:0046872
Vivi7g00070 515 SUPERFAMILY CCCH zinc finger 444 469 IPR036855 GO:0046872
Vivi7g00070 515 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Vivi7g00070 515 SUPERFAMILY CCCH zinc finger 394 419 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi7g00070 Vivi-Chr7 3676148 3682657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi7g00070 302 481 C2H2 Transcription Factor Family AT3G02830 32.778 3.62e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi7g00070 zf-CCCH 1.9e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi7g00070 - - pvu:PHAVU_011G180700g 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi7g00070 7 3676148 3682657 Vivi7g00070 7 3676148 3682657 ECH