Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05522 ATGGCATTTGCAGGAACAACTCAGAAATGTATGGCTTGTACCAAAACAGTTTATCTTGTTGATAAATTGACTGCTGATAATAGAATCTTTCACAAAGCTTGTTTCAGATGTCATCACTGCAAAGGAACCCTCAAGTTGAGCAACTACAATTCTTTTGAGGGAGTTCTTTACTGCAAGCCACACTTTGATCAACTGTTCAAGAGAACTGGAAGTCTTGAGAAAAGCTTTGAAGGGACACCAAAAATTGCAAAACCAGAAAGAAGTAGTGATAATGAGAAACCTGCGGCGGTTAAAGCCTCGAGTATGTTTGGTGGAACAAGAGACAAATGTTCTGGTTGTCAGAAAACAGTTTATCCAACTGAGAAGGTTACTGTGAATGGAACTCCTTACCATAAGAGTTGTTTCAAATGCTCCCATGGAGGGTGTGTTATTAGTCCTTCCAACTACATAGCACATGAGGGAAAACTTTACTGCAAACATCACCATGTTCAACTGATCAAGGAAAAGGGAAATTTAAGCCAGCTTGAAGGTGATCATGACAAAAATGCAAAAATCAACGGCGAGCAAGTTGTGGCAGAAACATGA 585 0.3966 MAFAGTTQKCMACTKTVYLVDKLTADNRIFHKACFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKRTGSLEKSFEGTPKIAKPERSSDNEKPAAVKASSMFGGTRDKCSGCQKTVYPTEKVTVNGTPYHKSCFKCSHGGCVISPSNYIAHEGKLYCKHHHVQLIKEKGNLSQLEGDHDKNAKINGEQVVAET 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05522 194 FunFam LIM domain and actin-binding 1 4 74 - -
Vivi4g05522 194 PANTHER OS06G0237300 PROTEIN 4 95 - -
Vivi4g05522 194 MobiDBLite consensus disorder prediction 77 103 - -
Vivi4g05522 194 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Vivi4g05522 194 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Vivi4g05522 194 FunFam LIM domain and actin-binding 1 104 174 - -
Vivi4g05522 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Vivi4g05522 194 Pfam LIM domain 110 164 IPR001781 -
Vivi4g05522 194 Pfam LIM domain 10 64 IPR001781 -
Vivi4g05522 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Vivi4g05522 194 CDD LIM2_SF3 110 170 - -
Vivi4g05522 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Vivi4g05522 194 Gene3D Cysteine Rich Protein 4 74 - -
Vivi4g05522 194 Gene3D Cysteine Rich Protein 105 174 - -
Vivi4g05522 194 MobiDBLite consensus disorder prediction 79 93 - -
Vivi4g05522 194 CDD LIM1_SF3 6 68 - -
Vivi4g05522 194 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Vivi4g05522 194 SMART lim_4 109 161 IPR001781 -
Vivi4g05522 194 SMART lim_4 9 61 IPR001781 -
Vivi4g05522 194 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05522 Vivi-Chr4 190130971 190132593 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Vivi4g05522 LIM 3.7e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05522 K09377 - gmx:100499957 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05522 4 190130971 190132593 Vivi4g05522 4 190130971 190132593 ECH
Vivi4g05522 4 190130971 190132593 Vivi4g05522 4 190130971 190132593 PCT