Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05511 ATGGACAAGATCAAGGTCAAGTACCAGCTCAAAAACGAAGACTGGAAACCCTCACCAATCACAGCTCTCGCCACTAGTATCGACGGTTCACGAGTCGCCGCTTCACGTGAGGACGGTTCCTTGGAGCTTTGGCTCGTTTCTCCTAATACTATAGGCTGGCACTGTCAATTGACTATTCATGGTGATCCTAATAGGATTGTGTCGTCGCTAGTTTGGTGTCCTGGCGGGGAGAAAGAGTTTCCGCATGGACGTTTGTTTTCTTCTAATATTGATGGCTCTGTTTCGTTTTGGGATCTTTGTCACTTGAAGCAAACGATGGTGCTTGAATCTAATGGTGTCTCAATCTGGCAAATGGCTGTGGCTCTGTCTAAAAGTGATGATGGCGAAACCAATGGTGTTCACATGGAAAATGGTTTTTCAAAGAGATTTCTTAATGGTTTTGATGATCACGAGGACAGTGAAAGTGATGAAGATTCCGATTCTGATTCACCTGAAGTTCTAAAGCAATCCAGTTTAGAGGGTCCAAGAGTAGCGGTTGCCTTTGATGATGGATGTGTTAGAATTTTCACTATTTCTGATACAAATGAGTTTATATACTTAAAATCCTTGACCCGGGTCACAGGACGGGTTTTAAGTGTGGCTTGGAGCGACGATGCTAAATTCATATTTTCAGGAAGTAGTGATGGGATAATACGTATCTGGAATGCCAAATCAGGTCTTGAAGCCCATAGGATTCCAGCTAGACTGGGTGGTGACAGTGGACATGAACTTTGTATATGGTCACTACTGTATTTAAGGTCTGGGACACTTGTTAGTGGAGACAGCAGTGGGAGCGTCCAGTTTTGGGACTGCCAACTAGGAGTGCCTTCTCAAGAACCTATTACTCGTCACAAGGGAGATGTTCATGCTCTGGCAGCAGCACCTAATCACAATATGGTGTTCTCGGCTGGTTCTGATGGAAAGGTGGTTCTTTATAAACTATCTTCATCAACCATGGAGAAAGAGAATTGGGTTTACGTTGATTATAAAAAAGGTCATTCACATGATGTCCGAGCCTTGACTGTTGCTGTGCCAATTAGCCAAGAAGATTCTTGGCCTGTTGAAAACAAAAAATCTCGTTATGAAGTAAAGCCAGATGATTCTAGTTACCGCAAATGGGCTCATTCTGGGCATCCCATGCTTATCTCAGCCGGGGATGACACAAAACTCTATGCATATGCTGTTAAAGAATTCACCGGGTTTAAACCACATTGTATCTGTCCTGTGCCTCAGAGAACACCAATTCAAGTAGCACTTAATACTTCCTTCAATCAAGCACCAATGCTTTTACTGCAGTCTTCACATTGGATAGAAGTCCGCTTGCTACATCTCAAAAATGTTCGCAGAACTGGAGATTATGCAAAGGCTGAAAGTGTTGGCCGATTCAAGATTAAGGCATCTCGTAAGATAATTTGTAGTGCCCTTGCTAACTCAGGGGTGTTTTTAGCGTATTCTGATAATGAAAAGCCTATTCTTTATAAAGTAGAGAGATCCGAAGCAGGAAAAATGACATGGAGTTTTGGTAAAAGGAAGCTTCCCGAGAGATTACCAACTGCCCATTCAATGATTTTTTCTCACGACTCTTCTTGGTTGATAATAGCGGGCCTTGATAGAAGGATATATGTTGTGGATGCCAATAGCTCGGAACTGGTACATACTTTTACACCATTTCGTGAGTCACGAGATGATGGATTATCACCAGCCGAACCACCCATCACAAAATTGTGTACTAGTTCTGATAGACAGTGGTTGGCCGCTGTCAATTGCTTTGGGGATATATATGTATTTAACTTGGAAACACTAAGGCAGCACTGGTTCATTTCGAGATTAGATGGCGCCTCTGTTACAGCTGCTGGATTTCCACCTCAGAACAGCAATGTACTGATAGTTACAACTTCTTCAAATCAAGTGTATGCATTCGATGTAGAGGCCAGACAATTGGGGGAATGGTCGGTGCGAAATACATTTGTTCTTCCCAAGAGATTTCACGAGTTTCCGGGTGAAGTCATCGGACTTTCATTCCCTCCCTCGTCAACTTCATCTTCAGTAATGGTCTATAGCTCCAGAGCGATGTGTTTGATTGACTTTGGCTTGCCCGTGAATCAAGATGAAGGGGAAAAGTTACATACTCAAGATTCAATAGTCAAGAGTTCACCAAAAATAAACGGTAAGAAAAGGACTAAATTTAGGAAGAACTTTGATAACGTCGAAGTTTTGCCATTAGAAAAGAAGAACTTTGATAACTTCGAAGTTTTGCCATTAGAAAAGGATAGAGTCTTATACCTATCGCATATTTCAAATAGTCTCTTCTTTATGATTGAAAAACCATGGTCTGATGTAGTCAATAGCTTAGAAGTTCAACCTGTCCACAGACATATTTATGGGACATAG 2430 0.4198 MDKIKVKYQLKNEDWKPSPITALATSIDGSRVAASREDGSLELWLVSPNTIGWHCQLTIHGDPNRIVSSLVWCPGGEKEFPHGRLFSSNIDGSVSFWDLCHLKQTMVLESNGVSIWQMAVALSKSDDGETNGVHMENGFSKRFLNGFDDHEDSESDEDSDSDSPEVLKQSSLEGPRVAVAFDDGCVRIFTISDTNEFIYLKSLTRVTGRVLSVAWSDDAKFIFSGSSDGIIRIWNAKSGLEAHRIPARLGGDSGHELCIWSLLYLRSGTLVSGDSSGSVQFWDCQLGVPSQEPITRHKGDVHALAAAPNHNMVFSAGSDGKVVLYKLSSSTMEKENWVYVDYKKGHSHDVRALTVAVPISQEDSWPVENKKSRYEVKPDDSSYRKWAHSGHPMLISAGDDTKLYAYAVKEFTGFKPHCICPVPQRTPIQVALNTSFNQAPMLLLQSSHWIEVRLLHLKNVRRTGDYAKAESVGRFKIKASRKIICSALANSGVFLAYSDNEKPILYKVERSEAGKMTWSFGKRKLPERLPTAHSMIFSHDSSWLIIAGLDRRIYVVDANSSELVHTFTPFRESRDDGLSPAEPPITKLCTSSDRQWLAAVNCFGDIYVFNLETLRQHWFISRLDGASVTAAGFPPQNSNVLIVTTSSNQVYAFDVEARQLGEWSVRNTFVLPKRFHEFPGEVIGLSFPPSSTSSSVMVYSSRAMCLIDFGLPVNQDEGEKLHTQDSIVKSSPKINGKKRTKFRKNFDNVEVLPLEKKNFDNFEVLPLEKDRVLYLSHISNSLFFMIEKPWSDVVNSLEVQPVHRHIYGT 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05511 809 Pfam WD domain, G-beta repeat 210 235 IPR001680 GO:0005515
Vivi4g05511 809 Gene3D - 8 249 IPR015943 GO:0005515
Vivi4g05511 809 ProSiteProfiles Trp-Asp (WD) repeats profile. 203 244 IPR001680 GO:0005515
Vivi4g05511 809 ProSitePatterns Trp-Asp (WD) repeats signature. 222 236 IPR019775 -
Vivi4g05511 809 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 335 IPR001680 GO:0005515
Vivi4g05511 809 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 17 615 IPR011047 -
Vivi4g05511 809 Gene3D - 250 515 IPR015943 GO:0005515
Vivi4g05511 809 MobiDBLite consensus disorder prediction 150 170 - -
Vivi4g05511 809 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 203 239 - -
Vivi4g05511 809 PANTHER WD REPEAT-CONTAINING PROTEIN PCN 8 809 IPR044622 GO:0010073|GO:0035266
Vivi4g05511 809 SUPERFAMILY WD40 repeat-like 390 693 IPR036322 GO:0005515
Vivi4g05511 809 Gene3D - 531 725 IPR015943 GO:0005515
Vivi4g05511 809 SMART WD40_4 522 557 IPR001680 GO:0005515
Vivi4g05511 809 SMART WD40_4 101 190 IPR001680 GO:0005515
Vivi4g05511 809 SMART WD40_4 290 326 IPR001680 GO:0005515
Vivi4g05511 809 SMART WD40_4 3 45 IPR001680 GO:0005515
Vivi4g05511 809 SMART WD40_4 196 235 IPR001680 GO:0005515
Vivi4g05511 809 SMART WD40_4 616 654 IPR001680 GO:0005515
Vivi4g05511 809 SMART WD40_4 560 610 IPR001680 GO:0005515
Vivi4g05511 809 SMART WD40_4 242 283 IPR001680 GO:0005515
Vivi4g05511 809 SMART WD40_4 52 98 IPR001680 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05511 K14548 - gmx:100776641 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05511 4 190001438 190007611 Vivi4g05511 4 190001438 190007611 ECH