Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05480 ATGGCCAATAATTCTCAACAACCCTCCGGCATTCAGTTTCGGCCAGTCATTCATGCGCAACAAGGGCAACCATTTGTTCCAATGACATCACAGCAATTTGGACATGCTGTTCCTTCGTCTAATATCGGGATGCCTGTTATTCAGGGTCAGCAATTGCAGTATTCTCAACAAATGCAACAGTTGCCTCCAAGACAAATTCAGCCCGGTCATCCCGTTTCTTCACCACAGGGTATACCTATGCCTTATATTCAAACAAACAGGCCGCTGACATCTGTTCCACAACATGCACAGCAAGCTGTTCCTCACTCAAACAATCATATGCCTGGTTTGGCTGTTTCAGGAGCACCTCCTCAATCTTCATATACTTTCACACAATCTTATGGCCAGCAGCAAGACAATGCTAATGCGTTGCCCCAATACCAGAATCCACCTCAAATGCTTGCGCCTCCTGCTGGACAACCTTGGCAGTCCTCAGTACCTCAGAGTGCTGCAGCGGTTACATCAGTACAGCAGGCTGGAGTTCAATCATCTGGTACTGCATCAAGTGATACTGCAGCTAGTACCACTAACCCGAACTCTGCATCTGATTGGGCAGAGCATGCTGCTGCTGATGGGAGAAGATACTACTACAACAAGACTACAAGGCAATCTAGTTGGGAAAAACCTTTGGAGTTGATGTCACCTCTTGAGAGGGCTGACGCATCAACTGTCTGGAAAGAGTTCACTGCTTCAGATGGAAGAAAGTATTACTTCAATAAGATTACTCAGCAATCAACATGGACAATACCAGAAGACCTCAAGCTGGCTCGTGAGCAGGCACATAAAACTATTAGCCAGGGAATGGTGTCAAATGCAAGTGATACATCCAATGCTGCTGCCTCCTCTGCTGCAACACCAACACCAGCTAATGCAGCTAATTCCAACACTTTGACATCTAACGGTCTTGCTTCAAGCCCGTCTTCTATTACACCAATTATAGCCACTGATCATCAACGGTTGGTTTCTGGTTTATCGGGTTCGGTAGTTACTTCAAACACCACAGGAGTTGAACCAAGCACTGTTGTAACTGTGAGCACTGCACCCACAGCAGTCACAGGAAGCTCAGGAATAGCAGCCAACTCACTTGATTCAAAAATTCCATCCATTGTTGAAAATCAAGCAACTAATGATTCTACTTCTTCTGTCAATGGAGCTCCTCTTCAAGATGTGGAGGAAGCCAAAAGAGGATTTCCTGTAGTTGGACAAACTAACATGACTCCTTCAGAAGAGAAAACCAATGATGGTGAAACTTTTGTATATGCAAATAAGCTGGAAGCAAAAAATGCATTTAAAGCGCTTCTGGAATCTGCGAATGTTCATTCTGATTGGACGTGGGAACAGGCAATGAGAGAAATCATCAGTGATAAAAGATATAATGCCCTGAAAACGCTTGGTGAGCGAAAACAAGCATTCAATGAGTATTTGGGCCAAAGGAAGAAGCTAGAGGCTGAAGAGAGGCGCATAAAGCAGAAAAAAGCCCGTGAAGAATTCACGAAGATGTTAGAAGAGTGCAAGGAGCTAAAATCGTCCACTAGATGGAGCAAAGCTATTAGTATGCTTGAAAATGATGAACGATTCAATGCCGTTGAAAGACCCAGAGACCGGGAAGATTTATTTGAAAGCCACATGGTGGAACTTGAGAGAAAGGAAAAGGAAAATGCTGCTGAGGAACACCGGCGGAACTTAGCAGAATATAGGAAGTTTCTTGAGTCCTGTGATTTTGTGAAGGTGAACAGTCATTGGCGAAAAATCCAAGATCGGCTAGAGGATGATGATAGACACTTACTACTTGAAAAAATTGACCGTTTGCTTGTTTACCAGGATTATATTCGTGACTTGGAGAAGGAGGAAGAGGAACAGAAAAGGATACAGAAGGAACGACTCCGTCGGGGTGAAAGGAAAAACCGTGATGCATTTCGCAAGTTGCTGGAAGAACATATTGGGGATGGAGTTCTTACCGCTAAAACACAATGGCGAGATTATTGCTTGAAGGTGAAAGAGTTACCTCAATATCAAGCTGTTGCATCAAATACATCTGGTTCTACTCCGAGAGATTTATATGAGGATGTCTTTGAAGATCTTGAAAAGAAGTATCATGAAGACAAGACACTCATAAAAGATACACTTAAGTCAGGCAAGATCACAGTAGTGACCTCATCAGTATATGAGGACTTCAAGTCTTCTGTATTAGAAGAAGCTGATTGCCAAACGATATCAGAGATCAATTTGAAGCTTTTATATGAAGAATTATTAGAGAGAGCTAAGGAGAAGGAGGAGAAAGAAGCTAAGAAACGCCAACGCCTTGCTGACGACTTTACTAACCTATTATATTCGTTCAAGGATATTACTACTACTTCAATATGGGAGGATTGCAAGCCACTTTTTGAGGAGGCACAAGAGTACAAGTCAATTGGGGATGAAAGCTACAGTAGAGAGATTTTTGAGGAATACATTACGTACTTAAAGGAAAAAGTTAAAGAGAAGGAACGCAAGCGTGAAGAGGAAAAGGCCAAGAAGGAGAAAGAAAGAGAAGAGAAAGAGAAACGGAAAGAGAAGGAGAAAAAAGAGAAGGAAAGAGAACGTGAGAAAGAGAAGTCTAAGGAACGACATAAAAAAGATGACACAGATAGTGATAATCCAGACATATCTGACAGCCATGGTTATAGAGAGGAGAAGAAAAAAGACAAGGATAAGGAAAGAAAACATCGGAGAAGACATCAGAGTAGTTTAGAAGACGTGGATTCTGAAAAAGACGAGAAGGAAGAATCTAGAAAATCACGAAGACATGGAAGTGAACGAAAGAAGTCTAGGAAGCATGCAAACTCTGAGTCAGACAATGAAACTCGGCATAAAAAACACAAGAGGGATCACGGGGATGGTTCCAGGAAAACTGGATGGAATGAGGAGCTTGAAGATGGGGAGCTCGGCGATGATGTAGAGGTTTAG 2985 0.4265 MANNSQQPSGIQFRPVIHAQQGQPFVPMTSQQFGHAVPSSNIGMPVIQGQQLQYSQQMQQLPPRQIQPGHPVSSPQGIPMPYIQTNRPLTSVPQHAQQAVPHSNNHMPGLAVSGAPPQSSYTFTQSYGQQQDNANALPQYQNPPQMLAPPAGQPWQSSVPQSAAAVTSVQQAGVQSSGTASSDTAASTTNPNSASDWAEHAAADGRRYYYNKTTRQSSWEKPLELMSPLERADASTVWKEFTASDGRKYYFNKITQQSTWTIPEDLKLAREQAHKTISQGMVSNASDTSNAAASSAATPTPANAANSNTLTSNGLASSPSSITPIIATDHQRLVSGLSGSVVTSNTTGVEPSTVVTVSTAPTAVTGSSGIAANSLDSKIPSIVENQATNDSTSSVNGAPLQDVEEAKRGFPVVGQTNMTPSEEKTNDGETFVYANKLEAKNAFKALLESANVHSDWTWEQAMREIISDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRIKQKKAREEFTKMLEECKELKSSTRWSKAISMLENDERFNAVERPRDREDLFESHMVELERKEKENAAEEHRRNLAEYRKFLESCDFVKVNSHWRKIQDRLEDDDRHLLLEKIDRLLVYQDYIRDLEKEEEEQKRIQKERLRRGERKNRDAFRKLLEEHIGDGVLTAKTQWRDYCLKVKELPQYQAVASNTSGSTPRDLYEDVFEDLEKKYHEDKTLIKDTLKSGKITVVTSSVYEDFKSSVLEEADCQTISEINLKLLYEELLERAKEKEEKEAKKRQRLADDFTNLLYSFKDITTTSIWEDCKPLFEEAQEYKSIGDESYSREIFEEYITYLKEKVKEKERKREEEKAKKEKEREEKEKRKEKEKKEKEREREKEKSKERHKKDDTDSDNPDISDSHGYREEKKKDKDKERKHRRRHQSSLEDVDSEKDEKEESRKSRRHGSERKKSRKHANSESDNETRHKKHKRDHGDGSRKTGWNEELEDGELGDDVEV 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05480 994 MobiDBLite consensus disorder prediction 842 994 - -
Vivi4g05480 994 Gene3D - 234 276 - -
Vivi4g05480 994 ProSiteProfiles FF domain profile. 643 706 IPR002713 -
Vivi4g05480 994 SUPERFAMILY FF domain 563 632 IPR036517 -
Vivi4g05480 994 SMART ww_5 192 224 IPR001202 GO:0005515
Vivi4g05480 994 SMART ww_5 233 265 IPR001202 GO:0005515
Vivi4g05480 994 MobiDBLite consensus disorder prediction 842 910 - -
Vivi4g05480 994 Pfam FF domain 438 487 IPR002713 -
Vivi4g05480 994 Pfam FF domain 505 555 IPR002713 -
Vivi4g05480 994 Pfam FF domain 783 830 IPR002713 -
Vivi4g05480 994 Pfam FF domain 574 622 IPR002713 -
Vivi4g05480 994 Pfam FF domain 647 702 IPR002713 -
Vivi4g05480 994 SUPERFAMILY WW domain 196 230 IPR036020 GO:0005515
Vivi4g05480 994 Coils Coil 831 883 - -
Vivi4g05480 994 Pfam WW domain 195 222 IPR001202 GO:0005515
Vivi4g05480 994 Pfam WW domain 238 263 IPR001202 GO:0005515
Vivi4g05480 994 Gene3D FF domain 567 634 IPR036517 -
Vivi4g05480 994 Gene3D FF domain 492 566 IPR036517 -
Vivi4g05480 994 Gene3D FF domain 635 716 IPR036517 -
Vivi4g05480 994 MobiDBLite consensus disorder prediction 151 196 - -
Vivi4g05480 994 FunFam pre-mRNA-processing protein 40A isoform X1 435 490 - -
Vivi4g05480 994 ProSitePatterns WW/rsp5/WWP domain signature. 197 222 IPR001202 GO:0005515
Vivi4g05480 994 SUPERFAMILY FF domain 495 565 IPR036517 -
Vivi4g05480 994 MobiDBLite consensus disorder prediction 99 196 - -
Vivi4g05480 994 SUPERFAMILY WW domain 225 266 IPR036020 GO:0005515
Vivi4g05480 994 MobiDBLite consensus disorder prediction 115 142 - -
Vivi4g05480 994 CDD WW 195 224 IPR001202 GO:0005515
Vivi4g05480 994 SMART FF_2 778 833 IPR002713 -
Vivi4g05480 994 SMART FF_2 645 710 IPR002713 -
Vivi4g05480 994 SMART FF_2 571 625 IPR002713 -
Vivi4g05480 994 SMART FF_2 503 558 IPR002713 -
Vivi4g05480 994 SMART FF_2 436 490 IPR002713 -
Vivi4g05480 994 Coils Coil 552 581 - -
Vivi4g05480 994 Coils Coil 619 647 - -
Vivi4g05480 994 ProSiteProfiles FF domain profile. 436 490 IPR002713 -
Vivi4g05480 994 CDD WW 238 265 IPR001202 GO:0005515
Vivi4g05480 994 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 191 783 IPR039726 GO:0045292
Vivi4g05480 994 MobiDBLite consensus disorder prediction 949 983 - -
Vivi4g05480 994 SUPERFAMILY FF domain 429 490 IPR036517 -
Vivi4g05480 994 Coils Coil 484 523 - -
Vivi4g05480 994 MobiDBLite consensus disorder prediction 917 941 - -
Vivi4g05480 994 SUPERFAMILY FF domain 771 840 IPR036517 -
Vivi4g05480 994 ProSitePatterns WW/rsp5/WWP domain signature. 238 263 IPR001202 GO:0005515
Vivi4g05480 994 ProSiteProfiles FF domain profile. 503 558 IPR002713 -
Vivi4g05480 994 Coils Coil 753 784 - -
Vivi4g05480 994 ProSiteProfiles WW/rsp5/WWP domain profile. 191 224 IPR001202 GO:0005515
Vivi4g05480 994 ProSiteProfiles FF domain profile. 571 625 IPR002713 -
Vivi4g05480 994 FunFam Pre-mRNA-processing protein 40A 636 717 - -
Vivi4g05480 994 FunFam Pre-mRNA-processing protein 40A 492 565 - -
Vivi4g05480 994 SUPERFAMILY FF domain 638 713 IPR036517 -
Vivi4g05480 994 ProSiteProfiles WW/rsp5/WWP domain profile. 232 265 IPR001202 GO:0005515
Vivi4g05480 994 Gene3D - 176 233 - -
Vivi4g05480 994 Gene3D FF domain 436 491 IPR036517 -
Vivi4g05480 994 FunFam Pre-mRNA-processing protein 40A 772 845 - -
Vivi4g05480 994 Gene3D FF domain 772 846 IPR036517 -
Vivi4g05480 994 MobiDBLite consensus disorder prediction 281 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05480 Vivi-Chr4 189309785 189326665 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05480 K12821 - gmx:100806019 1237.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05480 4 189309785 189326665 Vivi4g05480 4 189309785 189326665 ECH