Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05477 ATGGATCTTGGTGTAATGAGTTTAGATGGTTTAGTCACTTCAGATCCTGACCAAAAAACCAAATGGTTCAATGGATCTGGTTTACTCAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTGCTAAGAACTTTCAAGCTTGCCAAAACTGATCAACAACAAAGAAACTCTTGCACTTCTCCTTCTCCTAACTCCTCACTTTTGAGATCTAATGTTACCACTCTTTTCTCTGATGCTCAACACCAACAACAAATGCTTAGTTTCTCAACTCCTAATCCAAAATCAGAATCTTTTTTACTTGACAAAAATACCCCTACATTGTCTTATGCTTATCATCACCAACATCATAATCAACATCATAATCCAATGTCTACTTACAACAGAAACACAGGCTATGGTTCTGGAAGCATGCATGGAGGTTTTAATGGTGTTAGAGGACCATTCACACCTTCTCAATGGATGGAACTTGAACATCAAGCTTTGATCTATAAGTATATTACTGCAAATGTTGCTGTGCCTCATCATTTGCTTATTCCTATCAGAAAAGCTCTTGATTCTGCTGGCTTAAGTACCTTCTCAACTGCACTCCTCAGACCTAATGCATTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGACGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTCGATCAAAAGTATTGCGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCGGGCCAGGCTCTCACCACTGGTGGAACCACAAATACAGCTACTACTAATGTTACTTCTACCATTACTACTCCAAGTGGTCCGTCGAAGCAGATCAATGTTGCCGCTTCTCCTTCTTCGTCTATTGTTGTTCCCGGCGGCAACAACAACGCTACCAACACTCTTTCGTTTGCACATCAGGAACATTCCAAGAATATGAACAGCCTTATTGGACAAGATAACGCTTCTTCTGCTGCCAACACCATCAACAGGATGTTCATGAATAGCAAAGAGAATAACAGCAATAGTGAGAGGATGCAGGACGGTTCGGCACTACCGATGCTGCCACCCACCCTTGAGTTGAAACCAAAGGATGATAATTCCTTCATGATTCAGAAACCACACCTTCCTTATGATGAATCCTCAAGGAACAATGAATTCGGGTTTGTTACTTCCGATTCCCTGCTTAACCCTTCACAGAAAACCACTACCTTGCTTGGTCCTAGAACCTTTGGTTCGTCATCACAGAACCCTACAAACCGTGACACGGGCTCTCAAAATTCCCTTAGGCATTTCATCGACGACTTTCCCAAAACTCACTCTGATCACCACAATCATCATAACCGCTCGAGTGGTTTTTCTTGGCCGGAACTTGACATGCAGTCAGATAGGACACAGCTTTCAATCTCAACACCAATGACTGCCTCGGATTTCATGTCGTTCCCTTCTTCGGCCACCAATGAAAAACTCACACTTTCGCCTCTTAGGCTCTCAAGGGAAATCGACCCTATTCAAATGGGGTTAGGCGTCGGAAGTAGTACTCTCAATAACAATGAATCATCAAACCCTAGTACTAATCATCCCACCACAAGGCAAGCTAATTGGATTCCAATAACTTGGGAGAGTTCAATGGGCGGTCCACTCGGCGAAGTACTTCATCTTAGCAACATTGCTTGCAACGCAAGCGATGATCATTACGGCGGTAACAACATCAACAACAACAACTCGTCGGCTCTAAATCTCATGACAGATGGTTGGGACAATCACAATAGTCCACCAATGGGATCATCACCAACCGGCGTACTTCAAAAAACCGCATTTGGATCACTTTCCAATAGTAGTGCCGGAAGCTCTCCAAGGGCCGAAAACAACAAAACAACTCAAGAAGGAGCAAGTTTGTGCAATGATCATCTAGGATCAACTCTTGGTAATAATAACACTTCCTTTACTCCTTAA 2001 0.4343 MDLGVMSLDGLVTSDPDQKTKWFNGSGLLKQERSGTCTEDELLRTFKLAKTDQQQRNSCTSPSPNSSLLRSNVTTLFSDAQHQQQMLSFSTPNPKSESFLLDKNTPTLSYAYHHQHHNQHHNPMSTYNRNTGYGSGSMHGGFNGVRGPFTPSQWMELEHQALIYKYITANVAVPHHLLIPIRKALDSAGLSTFSTALLRPNALGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNTATTNVTSTITTPSGPSKQINVAASPSSSIVVPGGNNNATNTLSFAHQEHSKNMNSLIGQDNASSAANTINRMFMNSKENNSNSERMQDGSALPMLPPTLELKPKDDNSFMIQKPHLPYDESSRNNEFGFVTSDSLLNPSQKTTTLLGPRTFGSSSQNPTNRDTGSQNSLRHFIDDFPKTHSDHHNHHNRSSGFSWPELDMQSDRTQLSISTPMTASDFMSFPSSATNEKLTLSPLRLSREIDPIQMGLGVGSSTLNNNESSNPSTNHPTTRQANWIPITWESSMGGPLGEVLHLSNIACNASDDHYGGNNINNNNSSALNLMTDGWDNHNSPPMGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTTQEGASLCNDHLGSTLGNNNTSFTP 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05477 666 PANTHER GROWTH-REGULATING FACTOR 5 113 492 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vivi4g05477 666 SMART QLQ_2 147 183 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi4g05477 666 MobiDBLite consensus disorder prediction 250 298 - -
Vivi4g05477 666 MobiDBLite consensus disorder prediction 448 465 - -
Vivi4g05477 666 Pfam QLQ 148 182 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi4g05477 666 ProSiteProfiles QLQ domain profile. 148 183 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vivi4g05477 666 ProSiteProfiles WRC domain profile. 217 261 IPR014977 -
Vivi4g05477 666 Pfam WRC 218 260 IPR014977 -
Vivi4g05477 666 MobiDBLite consensus disorder prediction 404 447 - -
Vivi4g05477 666 MobiDBLite consensus disorder prediction 526 547 - -
Vivi4g05477 666 MobiDBLite consensus disorder prediction 598 666 - -
Vivi4g05477 666 MobiDBLite consensus disorder prediction 261 298 - -
Vivi4g05477 666 MobiDBLite consensus disorder prediction 404 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05477 Vivi-Chr4 189280683 189284308 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05477 1 623 GRF Transcription Factor Family AT2G22840 38.474 2.17e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vivi4g05477 WRC 6.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05477 - - cam:101496763 983.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05477 4 189280683 189284308 Vivi4g05477 4 189280683 189284308 ECH