Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05474 ATGAAGTCTATGATGAATGATACTAATAACACTAGTGATGATGGAAACAATCATAACTGGTTAGGTTTCTCTCTCTCACCCTACCATATGAAAATGGAGCTTACTTCTTCTGACCCTTCTCATCATCAGTACTATCATCATCATCATCATGATAACAACCAACCTTCTTCTTCTCTTCTTGTTCCCTCTAACTTCTACATGTCACCTTCACAACATTTAAACATTAACAACACTTCTTCATTATGTTATTATGGTGTTGGATCAGATAACAATAGTTCCTTTCATTCTTCTTTACCTATGATGCCTCTTAAATCTGATGGTTCTCTTTGCACTATGGAAGAAGCTCTCTCTACTTCACAATCACAAGTGATGTTACCAACTTCATCTCCAAAACTAGAAGACTTTCTAGGTGGTGCAACAATGGAAACTCATCATCATGAGTATGAAGGACATGAGAGAGAAACCATGGCTTTATTAAGCTTAGACAGCATCTACTACAACAACAATGTAGAAAATGAAACAACAAATAGAGAACATTCTTCTCTTGACATTTCATCATACTATTCAGGTTTTGCTTGTCATGGAATGTATCAAACACCATTGATGGAACAACAACAACAACAACATCAACAAGAAGAAGAAACTAAGGAAGAGAACATGTATTGCTTCAAGAACTTTGTAGCCCCTAGAGATTATCCTATGGAACAACATCATCAAGGGAACAATAATGTTGGAGATGATGGTTGTGTTGGAACAGTAAATGGTTGTGGAGAGTTACAGTCATTGAGCCTTTCTATGAGTCCTGGCTCTCAATCAAGCTGTGTCACTGTTCCAACTCAGATTTCACCTTCTGGTAATAATGATTCAGTTGTTGTTGAAGCTAAAAAGAGAGGACATGGTAAGGTTGGACAAAAGCAACCTGTTCATAGGAAATCTATTGATACATTTGGTCAGAGAACTTCTCAGTACCGAGGAGTAACTAGGCATAGATGGACAGGTAGATATGAGGCGCATTTATGGGATAACAGTTGCAAGAAGGAAGGGCAAACAAGGAAAGGAAGACAAGTTTATTTGGGTGGTTATGATATGGAAGTGAAAGCTGCAAGAGCTTATGATCTTGCTGCTCTCAAGTATTGGGGACCTTCAACTCACATCAACTTTCCGCTAGAAAATTACCGAAGTGAACTCGAAGAAATGAATAATATGAATAGGCAGGAATATGTTGCTCACTTGAGAAGAAAGAGTAGCGGCTTTTCAAGGGGTGCCTCGATGTATAGAGGAGTGACAAGGCACCATCAACATGGTAGATGGCAAGCAAGAATAGGCCGAGTTGCCGGAAATAGGGACCTCTATCTCGGAACATTCAGCACTCAAGAGGAAGCTGCCGAATCATATGATGTAGCCGCGATCAAATTCCGCGGGCTAAACGCGGTAACAAACTTTGAAATATCTCGATACAATGTGGAAAAAATCATGTCAAGCAACACTCTTCTATCCGGTGAACAAGCAAAAAGAACAACAAAGATCAAAGATAGCGAAGAACCGAAATCTGAAGTCAAAGAGTGTAACAACAATGTTGTATCAAGTTTAAGTCCAATCCTAAATAACCAAGAAGTTGAAGCAGTGAACAAGAATGAAAACAATTGGAATCAGTCCCCACAACAAGAGTCAAACACATGTGATCAAAAAACTGACTTCTCTATGTCCCTACAAGATATCATTGGGATTGATTCAGTAGATGATTCCCCCAACAAGATGATAAGGACTCATTTTTCAAATTCATCTTCACTTGTGACTAGCTTAAGTAGCTCAAGAGAATGCAGCCCTGACAACAAAAGCAATGGCCCCACAATGAATTTTCCTAAACCTCCAATAGGGTCTAAAATGGTTAGTCCTATAGCTACTAGGGTTGGATCTTGGTTCCCCTCAGGTGGTTCCATCTCAATGTCTCATTTGCCCGTTTTCGCGGCTTGGAGCGATATTTAG 1986 0.3938 MKSMMNDTNNTSDDGNNHNWLGFSLSPYHMKMELTSSDPSHHQYYHHHHHDNNQPSSSLLVPSNFYMSPSQHLNINNTSSLCYYGVGSDNNSSFHSSLPMMPLKSDGSLCTMEEALSTSQSQVMLPTSSPKLEDFLGGATMETHHHEYEGHERETMALLSLDSIYYNNNVENETTNREHSSLDISSYYSGFACHGMYQTPLMEQQQQQHQQEEETKEENMYCFKNFVAPRDYPMEQHHQGNNNVGDDGCVGTVNGCGELQSLSLSMSPGSQSSCVTVPTQISPSGNNDSVVVEAKKRGHGKVGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEVKAARAYDLAALKYWGPSTHINFPLENYRSELEEMNNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNRDLYLGTFSTQEEAAESYDVAAIKFRGLNAVTNFEISRYNVEKIMSSNTLLSGEQAKRTTKIKDSEEPKSEVKECNNNVVSSLSPILNNQEVEAVNKNENNWNQSPQQESNTCDQKTDFSMSLQDIIGIDSVDDSPNKMIRTHFSNSSSLVTSLSSSRECSPDNKSNGPTMNFPKPPIGSKMVSPIATRVGSWFPSGGSISMSHLPVFAAWSDI 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05474 661 ProSiteProfiles AP2/ERF domain profile. 424 482 IPR001471 GO:0003700|GO:0006355
Vivi4g05474 661 SUPERFAMILY DNA-binding domain 321 390 IPR016177 GO:0003677
Vivi4g05474 661 MobiDBLite consensus disorder prediction 602 620 - -
Vivi4g05474 661 SMART rav1_2 322 394 IPR001471 GO:0003700|GO:0006355
Vivi4g05474 661 SMART rav1_2 424 488 IPR001471 GO:0003700|GO:0006355
Vivi4g05474 661 CDD AP2 423 484 IPR001471 GO:0003700|GO:0006355
Vivi4g05474 661 FunFam AP2-like ethylene-responsive transcription factor 423 484 - -
Vivi4g05474 661 FunFam AP2-like ethylene-responsive transcription factor ANT 321 390 - -
Vivi4g05474 661 Coils Coil 389 409 - -
Vivi4g05474 661 ProSiteProfiles AP2/ERF domain profile. 322 388 IPR001471 GO:0003700|GO:0006355
Vivi4g05474 661 Pfam AP2 domain 322 380 IPR001471 GO:0003700|GO:0006355
Vivi4g05474 661 Pfam AP2 domain 425 474 IPR001471 GO:0003700|GO:0006355
Vivi4g05474 661 CDD AP2 321 388 IPR001471 GO:0003700|GO:0006355
Vivi4g05474 661 MobiDBLite consensus disorder prediction 602 626 - -
Vivi4g05474 661 SUPERFAMILY DNA-binding domain 423 484 IPR016177 GO:0003677
Vivi4g05474 661 Gene3D AP2/ERF domain 321 390 IPR036955 GO:0003700|GO:0006355
Vivi4g05474 661 Gene3D AP2/ERF domain 424 484 IPR036955 GO:0003700|GO:0006355
Vivi4g05474 661 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 128 551 - -
Vivi4g05474 661 PRINTS Ethylene responsive element binding protein signature 464 484 IPR001471 GO:0003700|GO:0006355
Vivi4g05474 661 PRINTS Ethylene responsive element binding protein signature 323 334 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05474 Vivi-Chr4 189188619 189192053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05474 1 505 AP2-EREBP Transcription Factor Family AT4G37750 52.523 1.68e-153 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Vivi4g05474 AP2 2.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05474 K09285 - gmx:100798179 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05474 4 189188619 189192053 Vivi4g05474 4 189188619 189192053 ECH
Vivi4g05474 4 189188619 189192053 Vivi3g01755 3 28434964 28438746 PCT