Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05469 ATGGATCTGTATTTGCTCGGTTGGATTTTAAGTTCCGTTTTGAGTTTATTTGCGTTGTACAGTTTGGTTTTCTCCGGGGAGAGAAATTCCGCTAAGCCGGTGAAGCAGACTGCGGAAAGCGTGACGACCGATGCCGGAGAAATTAAATCGGAGAAGCTTAACCGTGACGCTGATGTTATTATTGTTGGAGCCGGTATCGCCGGCGCGGCTTTGGCTCATACTCTCGGGAAGGATGGACGAAGAGTGCATGTCATTGAAAGAGATCTGAGTGAACCTGACAGAATTGTTGGAGAGTTGCTACAGCCTGGAGGCTATCTCAAATTAGTTGAACTGGGACTTGAAGATTGTGTGGACAACATTGATGCTCAAAAAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAACATACTCGTCTCTCTTATCCCTTGGAAAAGTTTCACTCAGATGTCTCTGGCAGAAGTTTTCACAATGGACGTTTTATTCAAAGGATGCGAGAGAAAGCTGCCTCTCTTCCCAATGTAAATTTGGAACAAGGATCGGTCACTTCCCTACTTGAAGAGAAGGGGACAATCAAAGGTGTGCAATACAAGAATAAAGATGGTCAGGAATTGACAGCTTATGCTCCTCTTACCATTGTTTGTGATGGCTGTTTCTCAAACTTGCGTCGTTCTCTTTGCAACCCTAAGGTAGACAACCCCTCTTGTTTTGTCGGCTTAATTTTAGAGAACTGTGAACTTCCATGTGCCAATCATGGCCACGTCATACTTGGAGATCCTTCACCAATTCTTTTCTATCCTATAAGTAGTACGGAGGTTCGATGTCTGGTTGATGTACCTGGTCAGAAGGTTCCCTCTATTTCAAATGGTGATATGACCAAGTATCTAAAGACTACGGTTGCTCCTCAGGTCCCCCCTGAGCTTTATGATGCATTCATAGCCGCAGTGGACAAGGGCAACATAAGGACAATGCCGAACAGAAGTATGCCCGCAGATCCCCGTCCTACTCCCGGCGCCGTACTGATGGGAGATGCATTCAACATGCGTCATCCACTAACAGGGGGCGGAATGACAGTAGCATTGTCTGATATTGTGGTGCTGAGAAATCTTCTCAAGCCTTTGCGTGACCTGAATGATGCACCAACACTTTGCAAATACCTTGAATCCTTTTATACCTTGCGTAAGCCTGTGGCATCCACCATAAATACATTGGCAGGTGCCCTTTACAAGGTTTTTTGTGCATCCCCTGATCAAGCAAGGAAGGAAATGCGCCAAGCTTGCTTTGATTATCTAAGCCTTGGAGGCCTATTCTCAGAAGGACCGATCTCTTTACTTTCAGGATTAAACCCTCGTCCCTTAAGTTTGGTTCTCCATTTCTTTGCTGTCGCAATATATGGTGTTGGCCGTTTACTATTACCATTTCCTTCACCTAGGCGGGTGTGGCTCGGAGCTCGATTACTCTCTGGTGCATCTGGAATCATCTTGCCCATAATTAAGGCTGAAGGAATTCGCCAAATGTTTTTCCCTGCCACTGTTCCAGCTTATTACAGAACTCCTCCGGTTTCACAAGAATGA 1572 0.4548 MDLYLLGWILSSVLSLFALYSLVFSGERNSAKPVKQTAESVTTDAGEIKSEKLNRDADVIIVGAGIAGAALAHTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLVELGLEDCVDNIDAQKVFGYALFKDGKHTRLSYPLEKFHSDVSGRSFHNGRFIQRMREKAASLPNVNLEQGSVTSLLEEKGTIKGVQYKNKDGQELTAYAPLTIVCDGCFSNLRRSLCNPKVDNPSCFVGLILENCELPCANHGHVILGDPSPILFYPISSTEVRCLVDVPGQKVPSISNGDMTKYLKTTVAPQVPPELYDAFIAAVDKGNIRTMPNRSMPADPRPTPGAVLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRDLNDAPTLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGLFSEGPISLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPRRVWLGARLLSGASGIILPIIKAEGIRQMFFPATVPAYYRTPPVSQE 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05469 523 Gene3D - 45 411 IPR036188 -
Vivi4g05469 523 FunFam Squalene monooxygenase 2 51 431 - -
Vivi4g05469 523 Pfam NAD(P)-binding Rossmann-like domain 61 87 - -
Vivi4g05469 523 Pfam Squalene epoxidase 208 480 IPR013698 GO:0004506|GO:0016020|GO:0050660
Vivi4g05469 523 SUPERFAMILY FAD/NAD(P)-binding domain 57 431 IPR036188 -
Vivi4g05469 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 335 350 - -
Vivi4g05469 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 207 222 - -
Vivi4g05469 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 58 80 - -
Vivi4g05469 523 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 350 366 - -
Vivi4g05469 523 PANTHER SQUALENE MONOOXYGENASE 18 519 IPR040125 GO:0004506|GO:0016126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05469 Vivi-Chr4 189086820 189090846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05469 18 523 Miscellaneous Gene Families AT1G58440 76.877 0.0 822
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05469 K00511 - gmx:100804406 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05469 4 189086820 189090846 Vivi4g05469 4 189086820 189090846 ECH
Vivi4g05469 4 189086820 189090846 Vivi3g01753 3 28392761 28396731 PCT