Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05458 ATGGAAGAATACATTAATAATCCAAATCCAAATCCAAATCAAAATCAATCTTCTAGGCCAAATTTCTTGTATAACCAGATTCCAATGAACAACAACTCCTTTCATCTTCAATCAAGAGGATCAGAAAATTGTTTTCAGTCAGAACAAGTACATCATCATCAACATCAACATCATCAACAAAGTGCTGTGAAAACTGAATCTAATAGTACTTCACAACTTCATACTCCAATTTTTCATTACCCTAATTTAATGAGAACAAATATTATTCCACAAACAATTATGAATCATCATCAACAAAGTGGTGGAGGAGGAGGAAGTCCTAGTAGCTCTAATGAAGCTGAAGCTATAAAAGCAAAAATCATTGCTCATCCTCAATACTCTAGTCTCTTACAAGCTTACATGGATTGTCAAAAGATTGGAGCACCACCTGAAGTGGTGGCTCGTATGGTGGAAGCAAGGCAAGAGTTTGAAGCAAGACAAAGATCTTCAGTTAACTCAAGAGAATCTTCAAAAGATCCAGAACTAGACCAATTCATGGAAGCATATTATGATATGCTTGTGAAGTATAGAGAAGAATTAACAAGGCCAATACAAGAAGCTATGGATTTCATGAGAAGAATTGAAACTCAGCTAAATATGCTTTGTAATGGACCCCTTAGGATCTTCCCAGATGATAAAAATGAAGGAGTTGGTTCATCAGAAGAAGAACAAGAGAACAGTGGCGGAGAAACCGATCAAGTTCCCGAGATCGATCCTCGCGCCGAAGACCGTGAACTGAAAAACCATCTCCTGAAGAAATACAGTGGTTACTTAAGTAGCCTTAAACAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAACTCCCTAAAGAAGCTAGACAAAAACTACTCAACTGGTGGGAATTGCACTACAAATGGCCATACCCTTCCGAATCGGAGAAGGTGGCATTGGCTGAATCAACAGGTTTGGATCAGAAGCAAATAAATAACTGGTTTATAAATCAAAGAAAGAGGCACTGGAAACCATCTGAAGACATGCAGTTTATGGTGATGGATGGACTGCATCCACAGAGTGCAGCTCTTTATATGGATGGTCATTACATGGCTGATGGACCCTATCGTTTAGGGCCATAA 1131 0.3828 MEEYINNPNPNPNQNQSSRPNFLYNQIPMNNNSFHLQSRGSENCFQSEQVHHHQHQHHQQSAVKTESNSTSQLHTPIFHYPNLMRTNIIPQTIMNHHQQSGGGGGSPSSSNEAEAIKAKIIAHPQYSSLLQAYMDCQKIGAPPEVVARMVEARQEFEARQRSSVNSRESSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPLRIFPDDKNEGVGSSEEEQENSGGETDQVPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMADGPYRLGP 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05458 376 ProSitePatterns 'Homeobox' domain signature. 316 339 IPR017970 GO:0000981|GO:0006355
Vivi4g05458 376 SMART ELK_2 258 279 IPR005539 GO:0003677
Vivi4g05458 376 Pfam KNOX1 domain 115 157 IPR005540 GO:0003677|GO:0005634
Vivi4g05458 376 Pfam ELK domain 258 279 IPR005539 GO:0003677
Vivi4g05458 376 Gene3D - 275 348 - -
Vivi4g05458 376 MobiDBLite consensus disorder prediction 224 252 - -
Vivi4g05458 376 Pfam KNOX2 domain 170 215 IPR005541 GO:0003677|GO:0005634
Vivi4g05458 376 ProSiteProfiles ELK domain profile. 258 278 IPR005539 GO:0003677
Vivi4g05458 376 MobiDBLite consensus disorder prediction 1 68 - -
Vivi4g05458 376 SMART KNOX1_2 114 158 IPR005540 GO:0003677|GO:0005634
Vivi4g05458 376 CDD homeodomain 290 342 IPR001356 GO:0003677
Vivi4g05458 376 MobiDBLite consensus disorder prediction 1 45 - -
Vivi4g05458 376 FunFam Homeobox protein knotted-1-like 2 283 345 - -
Vivi4g05458 376 ProSiteProfiles 'Homeobox' domain profile. 278 341 IPR001356 GO:0003677
Vivi4g05458 376 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 348 - -
Vivi4g05458 376 Pfam Homeobox KN domain 298 337 IPR008422 GO:0003677|GO:0006355
Vivi4g05458 376 SMART HOX_1 280 345 IPR001356 GO:0003677
Vivi4g05458 376 SMART KNOX2_2 165 216 IPR005541 GO:0003677|GO:0005634
Vivi4g05458 376 SUPERFAMILY Homeodomain-like 279 353 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05458 Vivi-Chr4 188933875 188938753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05458 36 376 Homeobox Transcription Factor Family AT4G08150 69.942 3.21e-157 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vivi4g05458 KNOX2 3.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05458 - - gmx:100800822 527.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05458 4 188933875 188938753 Vivi4g05458 4 188933875 188938753 ECH