Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05457 ATGAAGAGGTTCTTCACATGTTGTGTTTCCAAATTTCACTCTCACTCGAAGCTTAAGAAATCTCAGTCTCAGGTAATGGCAGGAAACATTTCTAATCCAAGTGGGAGCAATGCTGCTAATATTTTGCTGAATCATGACTTCTCTGATGGGCTCAACTCTTGGCATCCCAATTCTTGCAAAGGCTATGTAATTTCAGCCAAAGCAGGCGATCAAGCTGGAATTTCGATGGAGTCGGATCGTAATTATGCTGTTATCACTGACCGGAACGAATGCTGGCAAGGTCTTGAGCAAAATATCACAGACAGAATTTCGGTTGGTTCCGCTTACACGGTTTCGGCTTTTGTTGGAGTGTCTGGCCCTGGCATTTCTCAGGAATCTGCTGATGTAAAAGCTACACTGAAACTAGAATATCATGGTTCGGATACACAATATTTGTTCATTGGAAGTACTTCTGTTGTAAAGGGTAGCTGGGAAAAGTTGGAAGGAACATTTTCACTGTCTACTAAACCTGACCGGGTTATATTTTATTTGGAAGGACCGGCTCCTGGAGTTGACCTGCTTATAAGATCAGTAGACATCAATTGCTCCAGTCCAAATAACAATACCTTAAGCACAGTAGGATGTGTTTCTACTGGAGATGAAAACATCATAATAAATCCTCAATTTGAGGATGGCCTGAATAATTGGTCTGGAAGAGGCTGCAAGATTGTGTTGAATGATTCCATGGCAGATGGTAGAATTGTTCCAAAGTCTGGGAAATTGTTTGCACGCGCAACAGAACGAACACAAGCCTGGAACGGAATTCAGCAGGAGATAACTGGACGCGTGCAGCGCAAATTGGCCTATGAAATCACTGCTTTGGTTCGGATATATGGCAACAATGTCACTAGTGCCGATGTTCGAGCTACTTTGTGGGTTCAAACACCAGATTACCGAGAACAGTATATAGGCATTGCAAATGTACAGGCAACAGATACAGATTGGGTGACACTGCAGGGAAAATTTCTTCTAAATGGTTCTCCATCAAAAGTGGTCCTTTATTTAGAGGGCCCTCCTTCTGGCACTGACATTCTTGTTAATAGTTTGGTTGTAAAGCATGCTGCTAAAACACCTCCTTCTATACCACCAAATGCAAAGAATGTTATTTTTGGGCTTAATATAATTGAGAACAGCAATCTATCTGATGACACCAAAGGTTGGTTTCCCCTTGGTAGCTGCACTTTAAATGTTAAAACCGGTTCTCCTCATATAGTTCCACCAATGGCAAGAGATTCTCTTGGACCTCACGAACTCCTAAGTGGTCGCTACATACATGTAACGAATAGAACACAAACTTGGAATGGTCCTGCTCAGGTTATCACTGACAAAGTGAAGCTCTTTTTGACTTACCAAGTATCTGCTTGGGTCCGGATTGGTTCTGGTTCAAGTGGGCCGCAGAATGTGAATGTTGCCCTTGGTGCTGACGACCAGTGGATCAATGGAGGACAGACCGAGGTTTCGGATAAGCAGTGGCATGAAATTGGTGGATCCTTTAGAATTGAAAAGCAACCATCAAAGCTTATGGTTTATATCCAAGGTCCTGCTTCTGGTGTAGATTTAATGGTTGCTGGACTTCAAATTTTCGCCGTTGATCGACGTGCAAGGTTTAGATATTTAAAGATGCAGACAGACAAGATCCGGAAGCGTGATGTGGTCCTAAAATTCTCTGGGCTAGATGCTAGCAGTTACGTTAACACCACGGTGCAAGTTAGGCAAACACGAAATGATTTCCCGATTGGAACATGTATTAGCCGATCAAACATAGACAATGAAGATTTTGTCAACTTCCTTGTGAAACATTTCAACTGGGCTGTGTTTGCGAATGAGCTGAAGTGGTATTGGACTGAGGCACAACAAGGGAATTTAAATTACAAAGACGCTGATGATCTTTTAAGCTTGTGTGAAAAGTACAAGATAGAAACTCGTGGACACTGCATCTTCTGGGAAGTAGAACAAACCGTTCAACCATGGATTAAGTCACTGAATAATAATGATTTGATGACGGCAGTTCAAAACCGTTTAACCAGTCTTTTAACTCGTTACAAGGGTAAGTTCAGCCACTACGATGTTAACAATGAAATGCTGCATGGTTCATTTTACCAAGATAGATTAGGCAAAGATATAAGGGCAAACATGTTCAAAACTGCAAACCAACTCGATTCATCAGCTACATTGTTTGTGAATGATTATCATATTGAAGACGGATGCGACACAAAATCGTGTCCAAATAAATACACTCAACACATTCTTGATTTGCAAGACCAAGGTGCGCCAGTTGGCGGAATTGGAATTCAAGGTCATATTGATAACCCAGTTGGGCCTATTGTTTGCTCTTCGCTTGATAAATTAGGTATTCTTGGATTACCGATATGGTTTACTGAACTTGACGTGTCTTCTGCGAATGAATATGTGAGAGGTGATGATCTTGAAGTTATGCTACGAGAAGCTTTGGCTCACCCTGCTGTTGAAGGGATAATGTTGTGGGGATTCTGGGAGTTGTTTATGAGTAGAGATAATGCACATTTGGTTAATGCAGAAGGTGATATTAATGAAGCTGGTAAAAGGTTTCTAGCTTTGAAACAAGAGTGGCTATCTCATAGTCATGGTCATGTTGATGAGCTAGGTCAATTCAACTTTAGAGGGTTTTATGGAACATATAATGTGGATATTGTGACACCATCAAAGAAAATTTCTAAGACATTTGTGCTTGATAAAGGTGACAACCCAATGATGGTATCCATTGATTTATAA 2790 0.4115 MKRFFTCCVSKFHSHSKLKKSQSQVMAGNISNPSGSNAANILLNHDFSDGLNSWHPNSCKGYVISAKAGDQAGISMESDRNYAVITDRNECWQGLEQNITDRISVGSAYTVSAFVGVSGPGISQESADVKATLKLEYHGSDTQYLFIGSTSVVKGSWEKLEGTFSLSTKPDRVIFYLEGPAPGVDLLIRSVDINCSSPNNNTLSTVGCVSTGDENIIINPQFEDGLNNWSGRGCKIVLNDSMADGRIVPKSGKLFARATERTQAWNGIQQEITGRVQRKLAYEITALVRIYGNNVTSADVRATLWVQTPDYREQYIGIANVQATDTDWVTLQGKFLLNGSPSKVVLYLEGPPSGTDILVNSLVVKHAAKTPPSIPPNAKNVIFGLNIIENSNLSDDTKGWFPLGSCTLNVKTGSPHIVPPMARDSLGPHELLSGRYIHVTNRTQTWNGPAQVITDKVKLFLTYQVSAWVRIGSGSSGPQNVNVALGADDQWINGGQTEVSDKQWHEIGGSFRIEKQPSKLMVYIQGPASGVDLMVAGLQIFAVDRRARFRYLKMQTDKIRKRDVVLKFSGLDASSYVNTTVQVRQTRNDFPIGTCISRSNIDNEDFVNFLVKHFNWAVFANELKWYWTEAQQGNLNYKDADDLLSLCEKYKIETRGHCIFWEVEQTVQPWIKSLNNNDLMTAVQNRLTSLLTRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDSSATLFVNDYHIEDGCDTKSCPNKYTQHILDLQDQGAPVGGIGIQGHIDNPVGPIVCSSLDKLGILGLPIWFTELDVSSANEYVRGDDLEVMLREALAHPAVEGIMLWGFWELFMSRDNAHLVNAEGDINEAGKRFLALKQEWLSHSHGHVDELGQFNFRGFYGTYNVDIVTPSKKISKTFVLDKGDNPMMVSIDL 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05457 929 FunFam Endo-1,4-beta-xylanase A 578 880 - -
Vivi4g05457 929 Gene3D - 209 367 - -
Vivi4g05457 929 Gene3D - 34 194 - -
Vivi4g05457 929 Gene3D - 384 542 - -
Vivi4g05457 929 PANTHER GLYCOSYL HYDROLASE 376 921 IPR044846 GO:0004553|GO:0005975
Vivi4g05457 929 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 577 872 IPR001000 GO:0004553|GO:0005975
Vivi4g05457 929 PRINTS Glycosyl hydrolase family 10 signature 768 780 IPR001000 GO:0004553|GO:0005975
Vivi4g05457 929 PRINTS Glycosyl hydrolase family 10 signature 736 747 IPR001000 GO:0004553|GO:0005975
Vivi4g05457 929 PRINTS Glycosyl hydrolase family 10 signature 654 666 IPR001000 GO:0004553|GO:0005975
Vivi4g05457 929 SUPERFAMILY Galactose-binding domain-like 384 544 IPR008979 -
Vivi4g05457 929 SUPERFAMILY (Trans)glycosidases 577 880 IPR017853 -
Vivi4g05457 929 Pfam Glycosyl hydrolase family 10 587 843 IPR001000 GO:0004553|GO:0005975
Vivi4g05457 929 Pfam Carbohydrate binding domain 215 352 IPR003305 GO:0016798
Vivi4g05457 929 Pfam Carbohydrate binding domain 386 529 IPR003305 GO:0016798
Vivi4g05457 929 Pfam Carbohydrate binding domain 39 182 IPR003305 GO:0016798
Vivi4g05457 929 FunFam Glycosyl hydrolase family 10 protein 210 366 - -
Vivi4g05457 929 SUPERFAMILY Galactose-binding domain-like 39 195 IPR008979 -
Vivi4g05457 929 SUPERFAMILY Galactose-binding domain-like 213 367 IPR008979 -
Vivi4g05457 929 Gene3D Glycosidases 575 884 - -
Vivi4g05457 929 SMART glyco_10 623 873 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05457 Vivi-Chr4 188883962 188888865 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g05457 1 929 Glycoside Hydrolase AT1G58370 66.175 0.0 1302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05457 - - gmx:100816678 1593.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05457 4 188883962 188888865 Vivi4g05457 4 188883962 188888865 ECH
Vivi4g05457 4 188883962 188888865 Vivi3g01716 3 27779559 27783010 PCT