Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g05426 ATGGCTTCTTCTCCTCCGCCGCGTCACTCTTCTTCTCCAACTCCTCCGCCGTCGTACATCACTCACCTTCCCATTGCTCCGTCTTCTCCTTCTCGTTACAGTGAGAAGGTTCTGGAAGAAGAGGAACCGCGAGTTCCGATTCATGTAGTGACTAAAGCTTCTCAACTTCCGGTGGATTTTCTCGAACCTTCGCCTCAGTCGCATATTGTAATCGGTTTTGATTGTGAGGCTGTTGACTTGTGTCGCTATGGAAAACTTTGTATAATACAGCTTGCATTTCCGGATGCTATATACCTTGTTGATGCAATTGTGGGGGGAGATGTGCTTATCCAAGCCTGTAAGCCTGCACTTGAGTCTGATTATATCACCAAAGTGATTCATGATTGCAAACGTGACAGTGAGGCCTTGTACTTTCAATTCGGCATCAAGTTAAACAACGTGGTGGATACCCAGATTGCTTATTCGCTTATAGAAGAGCAAGAAGGACAAAAGAGATTGCCAGACGACTACATCTCACTAGTTGCTCTCCTTGCAGATCCTCGATATTGTGGCTTATCATATGCTGACAAGGAAGAAGTCCGGGTCCTTCTTCGACAGGACCCCAAGTTTTGGACTTACAGACCTTTATCTGAACAAATGATCCACTCTGCTGCCGATGATGTCCGTTTCCTTCTCTACATTTACCACCAAATGATGGCAAAATTAACTGAGCGATCTTTATGGCATCTTACTGTTCGTGGGGCCTTGTACTGCCGCTGTTTCTGTGTGAACAGTAATGATTATGCTGATTGGCCGTCTCTACCTCCAATTCCAGATACTCTTAAAGTTGATGAAAATGGTCCCGAGGAAGAAATTCTTTCTGTTCTTGATGTTCCCAAAGGAAAGATGGGATGCATTATTGGGAAAAAGGGAGCTTCGATTATGGCAATTAAGGAGTCTTGCAATGCGGAGATTCTCATTGGGGGTGCCAGGGGTCCACCGGACAAGGTCTTCATCTTAGGACCGGCGAAACAAGTGAAGAAAGCCGAGGCTATGTTGAGGGGTAGATTATTGTATATCTGA 1062 0.4539 MASSPPPRHSSSPTPPPSYITHLPIAPSSPSRYSEKVLEEEEPRVPIHVVTKASQLPVDFLEPSPQSHIVIGFDCEAVDLCRYGKLCIIQLAFPDAIYLVDAIVGGDVLIQACKPALESDYITKVIHDCKRDSEALYFQFGIKLNNVVDTQIAYSLIEEQEGQKRLPDDYISLVALLADPRYCGLSYADKEEVRVLLRQDPKFWTYRPLSEQMIHSAADDVRFLLYIYHQMMAKLTERSLWHLTVRGALYCRCFCVNSNDYADWPSLPPIPDTLKVDENGPEEEILSVLDVPKGKMGCIIGKKGASIMAIKESCNAEILIGGARGPPDKVFILGPAKQVKKAEAMLRGRLLYI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g05426 353 MobiDBLite consensus disorder prediction 1 37 - -
Vivi4g05426 353 CDD KH-I 288 347 - -
Vivi4g05426 353 PANTHER EGALITARIAN, ISOFORM B 38 350 - -
Vivi4g05426 353 SMART kh_6 283 351 IPR004087 GO:0003676
Vivi4g05426 353 CDD Egl_like_exo 59 255 - -
Vivi4g05426 353 Gene3D - 3 253 IPR036397 GO:0003676
Vivi4g05426 353 Pfam KH domain 289 347 IPR004088 GO:0003723
Vivi4g05426 353 SUPERFAMILY Ribonuclease H-like 16 261 IPR012337 -
Vivi4g05426 353 ProSiteProfiles Type-1 KH domain profile. 284 346 - -
Vivi4g05426 353 Pfam 3'-5' exonuclease 66 235 IPR002562 GO:0003676|GO:0006139|GO:0008408
Vivi4g05426 353 Gene3D K Homology domain, type 1 273 350 IPR036612 GO:0003723
Vivi4g05426 353 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 278 349 IPR036612 GO:0003723
Vivi4g05426 353 MobiDBLite consensus disorder prediction 1 23 - -
Vivi4g05426 353 SMART 35exoneu6 47 236 IPR002562 GO:0003676|GO:0006139|GO:0008408
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g05426 Vivi-Chr4 188088675 188093965 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g05426 K18740 - gmx:100788577 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g05426 4 188088675 188093965 Vivi4g05426 4 188088675 188093965 ECH