Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02596 ATGGCTTCTTCTTTTCCTCTCTATCAACTAACGCCTTGTTTCTTCTCAAAAACCCAGTTCCAAGGTTTGCACCATAGCTATTTGTGGCGACCTACGTTTGGCTCTTGTGTTCAAAACAGACTGCGACCTGTTAAAGCTTCGGTTGATGCTCCCCCATTTCCATTGTTTCAGCCTCCCACAGTTGAAGATCCATCTTCTCAGTTGGAGCCTGTGGATCCGGATTTCTACAGGATAGGATATGTCCGAAGCATGCGAGCTTATGGAGTTGATTTTAAGGAAGGGCCAAATGGTTTTGGTGTGTATGCTTCTAGAGATGTTGAACCTCTTCGCCGACCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGCTAACAATAAGCAAGAAGCTTCCGTGGATGTTTTTCCCTGATATAATTCCCATTGGTCATCCAATATTTGATATTATCAACTCGACAAATCCAGAGACAGATTGGGATTTACGATTAGCCTGCCTTCTCTTGTTTTCATTTGACTGCAAGGACAACTTTTGGCAGTATTACGGTGATTTCTTACCAAGTGCAGATGAAAGTACTAGCTTACTTCTAGCTTCAGAGGAGGAACTTTTGGAGCTGCAGGATCCCGATCTTGCTTCTACAATTAGAATTGAGCAACGACGAGTTTTAGATTTCTGGGAGAAGCACTGGCATACTGGTGCGCCCCTAAAAGTGAAACGTCTTGCGCGTGATCCTAAAAGGTTCACTTGGGCAGTGGGAATTGCACAGTCAAGATGTATCAACATGCAAATGAGAATGTGTGCATTAACTCAGGATGCAAATATGCTGATTCCTTATGCCGATATGCTGAACCATTCATTTGAGCCAAACTGTTTTTTCCATTGGCGGTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAAAAGATTAAAAAAGGAGACGAGATGACAGTTGATTACATGAGTGCACAGAAGAATGACATGTTAATGCAAAGATACGGATTTTCCTCGCCAGTGAATCCTTGGGATGTAATCGAATTCTCGGGAAAGGCACAAATCCATTTGGATTCCTTCTTGTCAGTTTTCAACATATCAGGCCTTCCTGAAGAGTATTATCGTAACGAAGTTCTATCGAATGCTGGCGATACTTTTGTTGATGGAGCGGTCATAGCTGCAGCGCGAACATTGCCAACATGGTCAGTTGGAGACATGCCTCCAATCCCAAGCAAAGAAAGGAAGGCTGCAAAGGCAATACAACTCGAGTGCAAACAAATGCTTGCAAAATTTGCTACCACCTCTAAGCAAGACAAGAAATTGTTAGATTCTTCACCGGAAGCCACGAGAACGCTTGAAGCTGCAATAAAGTATAGATTGCACAGGAAACTGTTAATCGAAAAAGTTTTCCTTGCATTGGAGATCTATGTAGAGCAATTACTGTTCTGA 1443 0.4241 MASSFPLYQLTPCFFSKTQFQGLHHSYLWRPTFGSCVQNRLRPVKASVDAPPFPLFQPPTVEDPSSQLEPVDPDFYRIGYVRSMRAYGVDFKEGPNGFGVYASRDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPIGHPIFDIINSTNPETDWDLRLACLLLFSFDCKDNFWQYYGDFLPSADESTSLLLASEEELLELQDPDLASTIRIEQRRVLDFWEKHWHTGAPLKVKRLARDPKRFTWAVGIAQSRCINMQMRMCALTQDANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQKIKKGDEMTVDYMSAQKNDMLMQRYGFSSPVNPWDVIEFSGKAQIHLDSFLSVFNISGLPEEYYRNEVLSNAGDTFVDGAVIAAARTLPTWSVGDMPPIPSKERKAAKAIQLECKQMLAKFATTSKQDKKLLDSSPEATRTLEAAIKYRLHRKLLIEKVFLALEIYVEQLLF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02596 480 CDD SET_LSMT 88 335 - -
Vivi4g02596 480 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 81 335 - -
Vivi4g02596 480 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 88 450 - -
Vivi4g02596 480 ProSiteProfiles SET domain profile. 76 321 IPR001214 GO:0005515
Vivi4g02596 480 Pfam SET domain 97 320 IPR001214 GO:0005515
Vivi4g02596 480 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 332 472 IPR036464 -
Vivi4g02596 480 FunFam Plastid transcriptionally active 14 357 477 - -
Vivi4g02596 480 Pfam Rubisco LSMT substrate-binding 409 461 IPR015353 -
Vivi4g02596 480 SUPERFAMILY SET domain 96 336 IPR046341 -
Vivi4g02596 480 Gene3D set domain protein methyltransferase, domain 1 81 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02596 Vivi-Chr4 125377035 125380709 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi4g02596 SET 4.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02596 - - tpra:123887006 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02596 4 125377035 125380709 Vivi4g02596 4 125377035 125380709 ECH