Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g01753 ATGGTGGACCCCTACGCGCTCGGATGGATCATATGCTCCTTTATCACCATCGTCGCGCTCTACAATCTCGTTTTCTATCGTAAGAATTCTTCCGAGACTACCTCTCAGAGCACCAGCGAGAATGTTACAACTGCCACAGGAGAATGCAGATCTTTTAATCCGGATGGAGATGTTGATATCGTCATTGTTGGAGCCGGTGTTGCTGGCTCCGCTTTAGCTTACACTCTCGGCAAGGATGGACGTAGAGTACTTGTTATTGAAAGAGATTTGAGTGAACCGGACCGAATTGTTGGCGAGTTACTACAACCTGGAGGCTATCTCAAATTGATTGAGCTAGGACTTGAAGATTGTGTGGAGAAAATTGATGCTCAGCAAGTGTTCGGGTACGCTCTTTTCAAGGATGGGAAACATACAAGACTCTCTTATCCCCTGGAAAAGTTTCACTCGGATATTGCTGGAAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGAGAGAAGGCTGCCTCCCTTCCCAATGTAAGGTTGGAGCAAGGAACGGTTACTTCGCTGCTCGAAGATCAAGGTACAATTAAAGGTGTGCAGTACAAAACGAAAGATGCTCAGGAATTATCAGCATGTGCCCCTCTTACCATTGTTTGCGATGGCTGTTTCTCGAACTTGCGCCGTACTCTTTGTAATCCTAAGGTAGAAGTTCCCTCTTGTTTTGTTGGCTTAGTCTTGGAAAACTGTGAACTTCCATGTGCAAATCATGGTCATGTCATACTGGGAGATCCTTCGCCGGTTCTGTTCTATCCCATAAGTAGCACAGAAATTCGTTGTCTGGTTGATGTTCCTGGTCAGAAGGTTCCATCTATTTCCAACGGTGAAATGGCAAAGTATTTGAAGACAGTGGTAGCTCCACAGGTTCCTCCTGAGCTTCATGATGCTTTCATAGCCGCAGTTGACAAAGGCAACATACGGACAATGCCAAACAGAAGCATGCCAGCTGATCCTTATCCTACTCCGGGAGCTCTTCTAATGGGAGACGCATTCAACATGCGCCATCCCCTAACCGGGGGTGGGATGACTGTGGCATTATCTGATATAGTAGTGCTGCGAAATCTTCTCAAGCCTTTGCGCGACCTAAACGATGCACCCAGCCTTTGTAGATACCTTGAATCCTTCTATACCTTGCGCAAGCCAGTAGCATCTACCATAAATACGTTGGCAGGAGCACTTTACAAGGTTTTTTGCGCATCACCTGATCCAGCAAGGAAAGAAATGCGTCAAGCTTGCTTTGATTATCTAAGCCTTGGAGGTTTATTCTCAGAAGGACCGGTCTCTTTGCTTTCAGGATTAAACCCTCGACCTCTGAGCTTGGTTCTTCATTTCTTTGCTGTTGCAATATACGGTGTTGGTCGTTTATTGTTACCATTTCCTTCCCCTAAACGCATATGGAGCGGAGCCAGATTAATCGCAAGTGCATCGGGAATCATCTTGCCCATAATTAAGGCAGAAGGAGTTCGACAAATGTTCTTCCCTGCAACTGTGCCTGCTTATTACAGAACTCCTCCAGCTGCATAA 1569 0.4602 MVDPYALGWIICSFITIVALYNLVFYRKNSSETTSQSTSENVTTATGECRSFNPDGDVDIVIVGAGVAGSALAYTLGKDGRRVLVIERDLSEPDRIVGELLQPGGYLKLIELGLEDCVEKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDIAGRSFHNGRFIQRMREKAASLPNVRLEQGTVTSLLEDQGTIKGVQYKTKDAQELSACAPLTIVCDGCFSNLRRTLCNPKVEVPSCFVGLVLENCELPCANHGHVILGDPSPVLFYPISSTEIRCLVDVPGQKVPSISNGEMAKYLKTVVAPQVPPELHDAFIAAVDKGNIRTMPNRSMPADPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRDLNDAPSLCRYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWSGARLIASASGIILPIIKAEGVRQMFFPATVPAYYRTPPAA 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g01753 522 FunFam Squalene monooxygenase 2 52 432 - -
Vivi3g01753 522 PANTHER SQUALENE MONOOXYGENASE 14 520 IPR040125 GO:0004506|GO:0016126
Vivi3g01753 522 SUPERFAMILY FAD/NAD(P)-binding domain 57 433 IPR036188 -
Vivi3g01753 522 Pfam Squalene epoxidase 209 481 IPR013698 GO:0004506|GO:0016020|GO:0050660
Vivi3g01753 522 Gene3D - 52 429 IPR036188 -
Vivi3g01753 522 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 208 223 - -
Vivi3g01753 522 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 59 81 - -
Vivi3g01753 522 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 351 367 - -
Vivi3g01753 522 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 336 351 - -
Vivi3g01753 522 Pfam FAD dependent oxidoreductase 59 89 IPR006076 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g01753 Vivi-Chr3 28392761 28396731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g01753 17 520 Miscellaneous Gene Families AT1G58440 77.273 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g01753 K00511 - gmx:100820031 926.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi3g01753 3 28392761 28396731 Vivi3g01753 3 28392761 28396731 ECH
Vivi4g05469 4 189086820 189090846 Vivi3g01753 3 28392761 28396731 PCT