LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi3g01716	ATGAAAAACTCGGAGAAGGTTGATGCTGGAAACCTCTCAGACTCTGAGGCATGCGTTTCTATTATCCAAAAGACAACAAACATGGTAGGTGTTTCCACTGACGACGAAAACATCATACTGAATCCTCAGTTTGAGGATGGCCTGAATAACTGGACTGGAAGAGGCTGCAAGATTGCGTTACACGATTCCATGGGAGACGGAAAAATCCTTCCAAAATCCGGGAAATTCTTTGCAGCTGCAACCGAGCGCACGCAAAGCTGGAATGGAATTCAGCAAGAGATCACTGGACGAGTGCAGCGCAAACTTGCGTATGAAGTCACTGCTTTAGTTCGGATATTTGGGAACAATGTCAATACTTCTGATCTACGTGTTACATTGTATGTTCAAAAACCAGATCTTCGAGAGCAGTATATAGGCATTGCCAATGTGCAGGCAACAAATAAAGATTGGGCTCAAATGCAAGGAAAGTTCCTTCTAAATGATTCTCCCTCAAAAGTTATTGTTTATTTTGAAGGTCCTGCTGCAGGCACCGACATTCTTCTAAATAGTTTGGTTATAAAGCATGCTGCTAAAACACCACCTTCGCCACCCCCGGATTTCGAGAATGTTGCTTTCGGCGTTAACATAATCGAGAACAGCAATCTGGATAATGGCACGAATGGATGGTCTCCTCTCGGTAACTGCACTTTGAGCGTTGGAACTGGTTCACCGCGTGTGATTCCACCAATGGCAAGAGACTCTCTTGGTCCTTACGAATCCCTTAGCGGACGCTACATTCTTGTAACCAACCGCACACAAACATGGATGGGACCTTCTCAGACGATTACTGAGAAATTGGAACTATATTTAACTTATCAAGTATCTGCTTGGGTCCGGACTAGTTCCGGACCTCATGGCCCTCAGAATGTCGGTATTTCCCTTAGTGTTGACGGCCAGTGGGTCAATGGAGGACAAACTGAAGTGGCTGATAGCAGATGGCATGAAATCGGCGGTTCATTTAGACTTGAAAAACAGCCATCTAATGTTTTTGTTTATATTCAAGGTCCTGTTTCTGGTGTCGACTTAATGGTTGCAGGACTTCAAATTTTTCCTGTTGATAGACAAGCAAGGTTTCGATATTTAAGGAAGCAAACAGACAAGATTCGTAAGCGTGATGTTACGCTAAAATTTTCTGGTGTGGACACATGCGATTATACCTTTGTGAAAGTTAAACAAATAGAGAACGATTTTCCAATTGGATCATGCATCACCCGAACAAATATCGACAATGAAGATTTTGTAGACTTCTTTGTGCAACATTTTAACTGGGCTGTATTCGGAAACGAGTTGAAATGGTTTTGGACAGAGCCACAAAAAGGTAACTTCAACTACAAGGATGCTGATGACATGTTAGACTTGTGTCAGAAATACAAGATCGACATTCGTGGGCATTGTATCTTCTGGGAAGTGGATGGCAATGTTCAACAATGGGTCAAATCACTTAACAAAAATGACTTAATGACAGCTGTTCAAAATCGCTTAAACGGATTATTAACTCGCTACAAAGGCAAGTTCAAGCACTATGATGTTAACAATGAAATGTTGCATGGTTCATTTTATCAAGACAGGCTAGGTAAGGATATACGGGCGAACATGTTCAAGACTGCGCACCAAGTCGATCCATCTGTTAACCTATTTGTGAATGACTATCACGTCGAAGATGGATGTGACGCGAATTCATCTCCCGAAAAATACATACAACAGATTCTTGATTTGCAAGACCAAGGCGCCCCGGTTGGGGGAATAGGAATTCAGGGCCACATTGATAGTCCTGTCGGGCCTATTGTTTGTTCTGCGCTCGATAAACTTGCTACTATCGGTCTACCAATCTGGTTTACCGAACTTGACGTATCTTCCACTAATGAATATATTAGAGGTGACGATTTGGAAGTTATGTTACGCGAAGCTATGGCGCACCCGGCTGTAGATGGTGTAATACTATGGGGATTTTGGGAGTTGTTTATGAGCCGCGACAATGCGCATTTGGTTAATGCAGAAGGCGAAATCAATGAAGCCGGGAGAAGGTTCATTGATCTTAAACAAGAGTGGCTATCTCGCAGTCATGGTCATGTTGATGAACAAGGAGAATTCAACTTTAGAGGATTCAGTGGAATGTACAATGTGGAAGTTGTTACCTTGGAAAAGGTAACTTCCAAGACATTTTTTGTTGACAAAGGTGATTCTTCATTGGTGATATCAATTGACTTGTAA	2250	0.4236	MKNSEKVDAGNLSDSEACVSIIQKTTNMVGVSTDDENIILNPQFEDGLNNWTGRGCKIALHDSMGDGKILPKSGKFFAAATERTQSWNGIQQEITGRVQRKLAYEVTALVRIFGNNVNTSDLRVTLYVQKPDLREQYIGIANVQATNKDWAQMQGKFLLNDSPSKVIVYFEGPAAGTDILLNSLVIKHAAKTPPSPPPDFENVAFGVNIIENSNLDNGTNGWSPLGNCTLSVGTGSPRVIPPMARDSLGPYESLSGRYILVTNRTQTWMGPSQTITEKLELYLTYQVSAWVRTSSGPHGPQNVGISLSVDGQWVNGGQTEVADSRWHEIGGSFRLEKQPSNVFVYIQGPVSGVDLMVAGLQIFPVDRQARFRYLRKQTDKIRKRDVTLKFSGVDTCDYTFVKVKQIENDFPIGSCITRTNIDNEDFVDFFVQHFNWAVFGNELKWFWTEPQKGNFNYKDADDMLDLCQKYKIDIRGHCIFWEVDGNVQQWVKSLNKNDLMTAVQNRLNGLLTRYKGKFKHYDVNNEMLHGSFYQDRLGKDIRANMFKTAHQVDPSVNLFVNDYHVEDGCDANSSPEKYIQQILDLQDQGAPVGGIGIQGHIDSPVGPIVCSALDKLATIGLPIWFTELDVSSTNEYIRGDDLEVMLREAMAHPAVDGVILWGFWELFMSRDNAHLVNAEGEINEAGRRFIDLKQEWLSRSHGHVDEQGEFNFRGFSGMYNVEVVTLEKVTSKTFFVDKGDSSLVISIDL	749

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi3g01716	749	SMART	glyco_10	443	693	IPR001000	GO:0004553\|GO:0005975
	Vivi3g01716	749	ProSiteProfiles	Glycosyl hydrolases family 10 (GH10) domain profile.	397	692	IPR001000	GO:0004553\|GO:0005975
	Vivi3g01716	749	PANTHER	GLYCOSYL HYDROLASE	193	741	IPR044846	GO:0004553\|GO:0005975
	Vivi3g01716	749	Gene3D	Glycosidases	396	705	-	-
	Vivi3g01716	749	SUPERFAMILY	Galactose-binding domain-like	206	366	IPR008979	-
	Vivi3g01716	749	SUPERFAMILY	(Trans)glycosidases	401	699	IPR017853	-
	Vivi3g01716	749	ProSitePatterns	Glycosyl hydrolases family 10 (GH10) active site.	620	630	IPR031158	-
	Vivi3g01716	749	Pfam	Carbohydrate binding domain	37	174	IPR003305	GO:0016798
	Vivi3g01716	749	Pfam	Carbohydrate binding domain	208	349	IPR003305	GO:0016798
	Vivi3g01716	749	FunFam	Glycosyl hydrolase family 10 protein	32	188	-	-
	Vivi3g01716	749	Pfam	Glycosyl hydrolase family 10	405	663	IPR001000	GO:0004553\|GO:0005975
	Vivi3g01716	749	SUPERFAMILY	Galactose-binding domain-like	35	189	IPR008979	-
	Vivi3g01716	749	Coils	Coil	675	695	-	-
	Vivi3g01716	749	PRINTS	Glycosyl hydrolase family 10 signature	556	567	IPR001000	GO:0004553\|GO:0005975
	Vivi3g01716	749	PRINTS	Glycosyl hydrolase family 10 signature	588	600	IPR001000	GO:0004553\|GO:0005975
	Vivi3g01716	749	PRINTS	Glycosyl hydrolase family 10 signature	474	486	IPR001000	GO:0004553\|GO:0005975
	Vivi3g01716	749	Gene3D	-	31	189	-	-
	Vivi3g01716	749	Gene3D	-	204	363	-	-
	Vivi3g01716	749	FunFam	Endo-1,4-beta-xylanase A	398	700	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi3g01716	Vivi-Chr3	27779559	27783010	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi3g01716	31	749	Glycoside Hydrolase	AT1G58370	69.986	0.0	1093

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi3g01716	-		-	vvo:131660789	1538.47

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi3g01716	3	27779559	27783010	Vivi3g01716	3	27779559	27783010	ECH
	Vivi4g05457	4	188883962	188888865	Vivi3g01716	3	27779559	27783010	PCT