Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00231 ATGGCTTCTTTTCCTCTTTACCAGCCAACCCACACCGTTTTCTCCAATACCCAGTTCAAGGGCTTGCGCAGTGGCTTTTTCTGGCGACCCTCTTACTCCTTTGGGACTCTTGCTGAAAACAAAGCACAACCTATTAAAGCTTTGGTTGCTAAATCCCCATTTCCCCTGTTTCAGCCTCCCCAAGTTGAAGAAGAGTCACCGTCTGAGTTGGAGCCTGTGGATCCTGACTTCTACAAGATTGGGTATGTCCGAAGCATGCGAGCTTATGGTGTTCAATTTAAAGAAGGGCCAGATGGTTTTGGTGTGTATGCTTCCAAAGATGTAGAGCCTCTTCGCCGAGCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGTTAACCATAAGCAAGAAGCTCCCATGGATGTTTTTTCCGGATATAATTCCCTTGGATCATCCAATATTTGATATTATTAACTCAACAAATCCAGAGACAGATTGGGACCTAAGGTTGGCATCCCTTCTCCTATTTGCATTTGACTGTGAAGGCAACTTCTGGCAATTGTATGGTGACTTCTTACCAAGTGCAGATGAGTGCACTAGCCTACTTCTGGCTTCAGAGGAAGAACTTTTGGAGCTACAGGATCCCAATCTTGCTTCCACTATTAGAAAACAGCAACAACGAGCCTTAGAATTCTGGCACAAGAATTGGCACAATGAAGCACCCCTTAAAATAAAGCGTCTTGCTCGTGATCCACAAAGGTTCATTTGGGCAGTGAGTATTGCACAGTCACGATGTATTAACATGCAAATGAGAGTTGGTGCGCTAAATCAAGAAGCAAACATGCTGATTCCTTATGCTGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGTTTCAAGGACAGGATGCTTGAGGTTCTCATAAATGCTGGACATCGTGTTAGAAAGGGAGATGAGATGACAGTTAATTACATGAGTTCGCAGAAGAACGACGTTTACATGCAAAGATATGGATTTTCATCACCTGTGAATCCATGGGATGAGGTACAATTCTCAGGCAATGCACGTATTCATTTGGATTCCTTCTTGTCAATCTTCAATATATCTGGCCTTCGTGAAGAGTATTACCATAACAACGATCTATCAAAGGATGGTGATACTTTTGTTGATGGAGCAGTCATAGCTGCAGCACGAACATTGCCAAGTTGGTCAGACGGGGATGTTCCTCCAATCCCTAGTGTGGAAAGAGAGGCAGTGAAGGAGTTGCAAAATGAATGCCAAAAAATGCTCTCCGGATTTGGTACAACCTCTAAGCAAGACCAGAAATTGCTAGATTCCATGACAGATGCTACGAGAACACTTGAAGCTGCAATTAAGTATAGGTTGCACAGAAAATTGTTGATGGAGAAAGTTATCAAAGCATTAGATATGTACCAAGAGAAAATACTGTTCTGA 1449 0.4251 MASFPLYQPTHTVFSNTQFKGLRSGFFWRPSYSFGTLAENKAQPIKALVAKSPFPLFQPPQVEEESPSELEPVDPDFYKIGYVRSMRAYGVQFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPLDHPIFDIINSTNPETDWDLRLASLLLFAFDCEGNFWQLYGDFLPSADECTSLLLASEEELLELQDPNLASTIRKQQQRALEFWHKNWHNEAPLKIKRLARDPQRFIWAVSIAQSRCINMQMRVGALNQEANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGHRVRKGDEMTVNYMSSQKNDVYMQRYGFSSPVNPWDEVQFSGNARIHLDSFLSIFNISGLREEYYHNNDLSKDGDTFVDGAVIAAARTLPSWSDGDVPPIPSVEREAVKELQNECQKMLSGFGTTSKQDQKLLDSMTDATRTLEAAIKYRLHRKLLMEKVIKALDMYQEKILF 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00231 482 CDD SET_LSMT 90 337 - -
Viun9g00231 482 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 83 337 - -
Viun9g00231 482 ProSiteProfiles SET domain profile. 78 323 IPR001214 GO:0005515
Viun9g00231 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 334 474 IPR036464 -
Viun9g00231 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 66 452 - -
Viun9g00231 482 Pfam SET domain 99 322 IPR001214 GO:0005515
Viun9g00231 482 Gene3D - 359 480 IPR036464 -
Viun9g00231 482 FunFam Plastid transcriptionally active 14 359 479 - -
Viun9g00231 482 Pfam Rubisco LSMT substrate-binding 412 463 IPR015353 -
Viun9g00231 482 SUPERFAMILY SET domain 98 338 IPR046341 -
Viun9g00231 482 Gene3D set domain protein methyltransferase, domain 1 83 337 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun9g00231 SET 4.4e-20 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00231 9 1468873 1475470 Viun9g00231 9 1468873 1475470 ECH