Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00455 ATGAAACACTATTGTAAGGCCGCTCTGAAGCTTTCAATTCAGATGTTGAATCATGTGAGTAATAATAACAATAGCTGCACATGGCTGTTGTTCGTAGTGAGGCACTACTCTAGAATTCAACCCCCAAGGCCTGTTTCTGTTGAACCGGTAATCAGGGTATCTAACAATATTGCTCGCCTGGATGCTCCTAAAGAAGGTCCAAAACCCAGACAGTTGTTATCATTGCCTCCTTTTCCTGGCCACCCTTTGCCTGCCAAGAGCTCAAATAGTGGTCCTGGACAGCGTGATTATGTTACTGCTGTCAATTGGATTAAGTATTACTTCAAGGGTACATGGGGTTCTGTCATTGAATCCCATTTCAGAGAGGGTCTTGTGCAAATGGAGGGCGTAGTTGGTGCTGACTCTTACACTCAGAAAGAAACTCTGATGAAACCCATGCGAAAGATTAGACCTAATGAAGTGATGGAACATGGTGCCAGAGTTCACGTTCCTGTTTCAATTGCTGAGACTAGGATTTCCAAAAGATATGATGCTATTCCTTGTGGAACACTATATCCAAATGCTGACGAAATTAAGTATCTGCAAAGGCTTGTGATTTACAAGGACTCGGCTATTATTGTGCTTAATAAACCTCCAAAGTTGCCGGTTAAGGGGAGTTTACCAGTTCATAATAGCATGGACGCATTGGCAGCTGCTGCACTGTCCTATGATTATGATGAGGGCCCTAAACTAGTTCACCGTCTTGACAGAGAGACCAGTGGCATCCTTTTACTGGGTAGAACTAAAGATAGTGCATCTCATCTCCAATGGTTGTTCACTAACATCAACAATGCCAAATCTTCTTGTAAGGCTTGGAATGATGCATGTGAAGCTACGTATCAGAGGTATTGGGCATTGGTCATAGGGACTCCCAAGGAGAAGGAAGGCGTCATCCATGCTCCTCTTTCTAAGGTGCTTCTAAATGATGGGAAGACTGAGAGGATAATACTAGCTCACCATTCAAGTGTAGAACCACGCCAAGAGGCTGTAACTGAGTATCGGGTGCTTGGTCCTAAGATAAATGGATGCTCGTGGGTGGAGCTACGTCCTCTTACTTACAGGAAGCATCAGTTGCGTGTCCATTGCGCTGAAGCACTTGGCACACCAATAGTGGGTGACTACAAGTATGGCTGGTTTGTGCACAGCCGATGGAAACAAATGCCGCGAATCGATATCGAGCCAACAACTGGAAAACCATACAAGTTGCGTAGGCCAGAAGGCCTTGATGTTCAGAAGGGAAGTGTTTTATCGAAGGTTCCTCTATTGCATCTTCACTGCAGAGAACTTGTGCTCCCCAACATCGCCAAGTTTCTACAAGTTTTGAACAATAGTTCAGAAGAACTACACGGTTCACTTAGCCAGCAGCCTGATGTTCTTCGATTTGTGGCAACAATGCCATCCCATATGAGAATTAGTTGGAATCTTATGTCCTCGTATTTAGTCTGA 1485 0.4444 MKHYCKAALKLSIQMLNHVSNNNNSCTWLLFVVRHYSRIQPPRPVSVEPVIRVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPAKSSNSGPGQRDYVTAVNWIKYYFKGTWGSVIESHFREGLVQMEGVVGADSYTQKETLMKPMRKIRPNEVMEHGARVHVPVSIAETRISKRYDAIPCGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGILLLGRTKDSASHLQWLFTNINNAKSSCKAWNDACEATYQRYWALVIGTPKEKEGVIHAPLSKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRIDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLQVLNNSSEELHGSLSQQPDVLRFVATMPSHMRISWNLMSSYLV 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00455 494 ProSitePatterns Rlu family of pseudouridine synthase signature. 245 259 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Viun8g00455 494 Gene3D Pseudouridine synthase 190 450 - -
Viun8g00455 494 MobiDBLite consensus disorder prediction 61 93 - -
Viun8g00455 494 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 99 489 - -
Viun8g00455 494 SUPERFAMILY Pseudouridine synthase 190 446 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Viun8g00455 494 CDD PseudoU_synth_RluA_like 205 401 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Viun8g00455 494 Pfam RNA pseudouridylate synthase 205 376 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00455 Viun-Chr8 3338719 3343947 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00455 - - gmx:100817786 889.026