Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00451 ATGGAGGAATACACTAATAACAATCACTTGAGTGAAAACACTGCTCCAACTCCAAGTCCAAGGCCTAATTTCTTGTACTCTTCTCCCCCCACTGGTGGAAACCATAGCCATAGCCATAGCCATCATCAGCATCATCACCACCAGCATCATCAGTTTCCAATCAACACCTTCCATCTTCAATCGGGTGGATCAGATCATTGCTTTCAGTCTGATCAAGTGCCACCACACCCCTCTGTGAAAACCGAAGCCAGCACTTCTCAGCTTCACGCTCCTATTTTCCACTACCCTTTAATGAGAGGTACCCTTCACAACAACAACACCACTATGCATCACCAACAAGGACCCAGTCCTACAACCTCCACCACCGAAGTTGAAGCCATAAAAGCTAAAATCATTGCTCACCCTCAGTACTCCAATCTCCTCGAAGCTTATATGGATTGCCAAAAGATAGGAGCTTCACCGGAAGTGGTGGCGCGTATGGTTGCGGCAAAGCAAGAGTTTGAGGCACGGCAAAGATCCTCAGGTGTTTCGAGGGATACCTCTAAAGACCCTGAACTTGATCAATTCATGGAAGCATACTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATTCAAGAGGCCATGGATTTCATGCGAAGGATAGAAACTCAGCTAAATATGCTATGCAATGGACCCGTCAGGATCTTCTCTGAAGAAAAATGTGAAGGGGTTGGTTCATCAGATGAGGATCAAGAGAACAGTGGAGGAGAAACAGAACTTCCAGAGATTGATCCTCGAGCAGAAGATCGTGAACTTAAAAACCACTTACTGAGGAAATACAGTGGTTACTTGAGTAGCCTAAAACAAGAACTTTCCAAGAAGAAAAAGAAAGGGAAACTCCCCAAAGATGCAAGGCAAAAGCTACTTAACTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCAGAGAAGGTGGCATTGGCTGAATCAACTGGTTTGGACCAAAAGCAAATAAATAATTGGTTCATAAACCAAAGAAAGAGGCACTGGAAACCCTCTGAAGACATGCAATTTATGGTGATGGATGGTCTGCATCCTCAAAGTGCAACTCTCTACATGGATGGTCATTACATGGCAGATGGTCACTACCGTCTAGGGCCATGA 1161 0.4444 MEEYTNNNHLSENTAPTPSPRPNFLYSSPPTGGNHSHSHSHHQHHHHQHHQFPINTFHLQSGGSDHCFQSDQVPPHPSVKTEASTSQLHAPIFHYPLMRGTLHNNNTTMHHQQGPSPTTSTTEVEAIKAKIIAHPQYSNLLEAYMDCQKIGASPEVVARMVAAKQEFEARQRSSGVSRDTSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSEEKCEGVGSSDEDQENSGGETELPEIDPRAEDRELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSATLYMDGHYMADGHYRLGP 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00451 386 ProSiteProfiles ELK domain profile. 268 288 IPR005539 GO:0003677
Viun8g00451 386 Gene3D - 293 355 - -
Viun8g00451 386 MobiDBLite consensus disorder prediction 1 81 - -
Viun8g00451 386 Pfam Homeobox KN domain 308 347 IPR008422 GO:0003677|GO:0006355
Viun8g00451 386 MobiDBLite consensus disorder prediction 237 265 - -
Viun8g00451 386 CDD homeodomain 300 352 IPR001356 GO:0003677
Viun8g00451 386 Pfam KNOX1 domain 126 168 IPR005540 GO:0003677|GO:0005634
Viun8g00451 386 ProSitePatterns 'Homeobox' domain signature. 326 349 IPR017970 GO:0000981|GO:0006355
Viun8g00451 386 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 40 358 - -
Viun8g00451 386 SMART ELK_2 268 289 IPR005539 GO:0003677
Viun8g00451 386 MobiDBLite consensus disorder prediction 37 52 - -
Viun8g00451 386 Pfam KNOX2 domain 180 226 IPR005541 GO:0003677|GO:0005634
Viun8g00451 386 MobiDBLite consensus disorder prediction 53 68 - -
Viun8g00451 386 SMART KNOX1_2 125 169 IPR005540 GO:0003677|GO:0005634
Viun8g00451 386 SMART KNOX2_2 176 227 IPR005541 GO:0003677|GO:0005634
Viun8g00451 386 MobiDBLite consensus disorder prediction 1 36 - -
Viun8g00451 386 SMART HOX_1 290 355 IPR001356 GO:0003677
Viun8g00451 386 Pfam ELK domain 268 289 IPR005539 GO:0003677
Viun8g00451 386 SUPERFAMILY Homeodomain-like 289 364 IPR009057 -
Viun8g00451 386 FunFam Homeobox protein knotted-1-like 2 293 355 - -
Viun8g00451 386 ProSiteProfiles 'Homeobox' domain profile. 288 351 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00451 Viun-Chr8 3263421 3268908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00451 64 386 Homeobox Transcription Factor Family AT4G08150 70.482 1.10e-155 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Viun8g00451 KNOX2 2.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00451 - - vum:124822256 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00451 8 3263421 3268908 Viun8g00451 8 3263421 3268908 ECH