Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00438 ATGGGGGGTCAGGAAAATGCCATGGGATTTCAACACGGAAATGAGAACATTCTGACTTGTCCATCTTCAGCTCTCAGTGGTGCCAATGTTAATGTTTCAGATATGGCTATTAGTTCCGTGTCTATGGCCAAACCTTCTGATGTAGCTAACCCTTTTCTTGCTTCTTCGGCTTGGGATCCACTTGTTTCCTTGAGTCAGGCTCAAACTTTTGGAGGCTCCTCAATGGTTTCTCATGCTGAGTTTGCGAATGCCAACTCTTCTTACCCTCTTGTTCTGGAAAACCAAGGAATGAGCAACACTTCCCACCTTGTTCAATACATGTCTGACTCAAATCTAGGGGGCATGGTTCCCAAGGTTCATTCCTATGCAAGCAGGGGCTTCTCAGAAATGGTTGGTGCTGCTGCCCCTTTTGGCCAGCATGGGTCTGGTGATGTGGCTAACTCAGGGTACCCACCACATTATAATCCGATCAAGGAGGCTCAGATTAATGGTGAACAATCTCAGGTTGAGGATTCAATTCCTGAAGAGGAAGCACCAGGATCTGGTCCTAGTGGGAATAGAAGAAAGAGAGGGCTTGATCATAATTCTACCTTCAGCCCAAATAAGAATGCTGAGAGTGAAACTGTGAAAGATTCTCCGGGGAGGGCCTGTGATGGTCCAAAAGAACATGAAAAGAAGCCAAAAGTTGAGCAGAACAATAGTGCAGATTTGCGTGGCAAGCAATCAGCGAAGCAAGCTAAGGACAACAGTTCTCAAAGTGGAGAAGCTCCTAAAGAAAATTTCATTCACGTGAGAGCTAGAAGAGGACAAGCCACTAACAGCCACAGTCTTGCAGAAAGAGTGAGAAGAGAAAAGATTAGTGAGCGAATGAGGCTGCTTCAAGAACTTGTTCCTGGTTGCAACAAGATAACTGGCAAAGCAGTAATGCTGGATGAGATAATAAACTATGTGCAATCACTTCAGCAACAGGTTGAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTAAACTTTGATGTAGACAGGATTCTATCCAAGGATATTCTTCAATCACGCATAGGACATGGAATTAGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTCCCCAGTGGAAATTTCCATGGAACATTGGCTGGCATGCCTAGTACATCATCACAATTCCCTCCTTTGCCCCAGAATGTTTTGGACCATGAGTTCCAAAGCTTCTATGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGGACCAAATGGGCGGTTGAAAACAGAGTTATAG 1293 0.4455 MGGQENAMGFQHGNENILTCPSSALSGANVNVSDMAISSVSMAKPSDVANPFLASSAWDPLVSLSQAQTFGGSSMVSHAEFANANSSYPLVLENQGMSNTSHLVQYMSDSNLGGMVPKVHSYASRGFSEMVGAAAPFGQHGSGDVANSGYPPHYNPIKEAQINGEQSQVEDSIPEEEAPGSGPSGNRRKRGLDHNSTFSPNKNAESETVKDSPGRACDGPKEHEKKPKVEQNNSADLRGKQSAKQAKDNSSQSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVDRILSKDILQSRIGHGISAYGPGINSSHTFPSGNFHGTLAGMPSTSSQFPPLPQNVLDHEFQSFYGIGYDSNTALDNLGPNGRLKTEL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00438 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 270 320 IPR011598 GO:0046983
Viun8g00438 430 SMART finulus 276 326 IPR011598 GO:0046983
Viun8g00438 430 CDD bHLH_AtBPE_like 260 345 - -
Viun8g00438 430 MobiDBLite consensus disorder prediction 164 260 - -
Viun8g00438 430 MobiDBLite consensus disorder prediction 208 233 - -
Viun8g00438 430 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 161 374 IPR024097 GO:0006355
Viun8g00438 430 MobiDBLite consensus disorder prediction 234 257 - -
Viun8g00438 430 Gene3D - 267 341 IPR036638 GO:0046983
Viun8g00438 430 FunFam Basic helix-loop-helix transcription factor 267 339 - -
Viun8g00438 430 Pfam Helix-loop-helix DNA-binding domain 273 321 IPR011598 GO:0046983
Viun8g00438 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 338 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00438 Viun-Chr8 3127895 3132067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00438 1 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 43.707 3.58e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun8g00438 HLH 4.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00438 - - gmx:100801930 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00438 8 3127895 3132067 Viun8g00438 8 3127895 3132067 ECH