Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00436 ATGAAGTCGATGAATGATGGCAACACTGATGATGGGAACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAAATTACTTCTTCTGCTGACCCTCCCCATCATCACCATCATCACTACTATCATCACCCTCAGGTTTCTGCGGCTGCAGGACCTTGCAACACTGTTCCAACAGGCTTCTATATTTCCCCTTCACACCTTAACCCCTCAGGAATCTGCTATGGTGTTGGAGAAAACAGTGCCTTTCACCCTCCCTTGGCCATGATGCCCCTCAAGTCAGATGGCTCACTCTGCATTATGGAAGCTCTCACCAGATCACAAACCCAAGTGATGGTGCCAACCACATCCCCAAAACTGGAGGACTTTCTTGGTGGTGCAAGTGTGGGAGCTCAAGACTATGGAGGCCATGAAAGAGAAGCAATGGCTCTGAGCCTAGACAGCGTCTACTACAGCAGCCAGAATGCAGAACCTGAAGCCAACAGAGGCCATCCTTCTTCTTTGGGTCTTCTTTCTGACCCTTTCAGACAGCAAACCCACCCATATTACTCTGGGCTTGGGATTTACCAGGTGGAGGAAGAACCGAAGCAACCACACGTGACGGTTTGCAGCTCCCAAATGCCTCACGCGGTGGAAGAAGGCATTGCTTGCTTCAAAAACTGGGTGCCACCAAGGGGTTATTCTTCCACTCAGCAGAATCTGGAGCAGCAGCAAGGCAATAATAGCAGTGGCATGGTGGAGGGTCATGGTGCTTCTGGAAATGCTGGTGTTGGTTGTGGGGAGTTACAGTCTTTGAGTTTGTCTATGAGTCCTGGTTCTCAATCTAGCTGTGTCACAGTCCCAACTCAGATCTCATCTTCCAAAACTGAATCAGTAGCTGGGGATGCCAAAAAGAGAGGCTCTGCTAAGCTTGGCCAGAAGCAACCTGTGCATAGGAAATCTATTGACACATTCGGCCAGAGAACTTCTCAGTATAGAGGTGTCACAAGGCATCGATGGACTGGAAGATATGAAGCACATTTGTGGGATAATAGTTGCAAGAAGGAAGGGCAAACCAGGAAAGGACGACAAGTTTATTTGGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTTGCGGCTCTTAAGTATTGGGGACCTTCAACACACATAAACTTCCCGCTAGAAAATTACCAAACTGAACTTGAAGAAATGAAGAATATGAGCAGGCAGGAGTATGTGGCCCACTTGAGAAGAAAGAGTAGTGGGTTTTCAAGGGGTGCATCAATGTACAGAGGAGTGACAAGGCACCACCAGCATGGCAGGTGGCAAGCAAGGATAGGCAGAGTTGCAGGAAATAAGGACCTTTATCTTGGGACATTCAGTACTCAAGAAGAAGCAGCTGAAGCATACGACGTAGCTGCGATCAAATTTCGTGGGGTGAATGCTGTTACGAACTTCGACATCTCAAGATACGATGTCGAGAGGATCATGGCCAGCAACACTCTTCTGGCAGGAGAGTTAGCTAGAAGGAACAAGGAAAGTGAGCAAAGAACTGAGGGCATGGAGTACAACGGTGTGTCAAGCCAACAACAAGAGGCTGAGAATGTGAACAACAATGAGAAGAATGAGAAGGGATCATCATCATCATCGGATTGGAAGATGGGTTTGTATCATCAGCAACACCAACAACAGTCAAACAACAACAACTGTGAGATGAAAAACATGAAGTGTGGAAATTATAGAGGTTCTGGTTTCTCTGTGTCCCTACAAGATCTCATTGGGATTGACTCAGTAGGATCTAGCCAGGCCATGATAGAGGAGTCTACTAAGATAGGTGCTCATTTTTCAAACCCCTCCTCGCTGGTCACCAGTTTAAGCAGCTCAAGGGAAGGTAGCCCCGACAAAACGGGTCCCACCATGCTCTTTCCTAAGCCTCCGGTGGGGTCAAAGGTTGTCACTAGCCCTATTGCTAATGGTGTGAGTGTTGGCGCATGGTTTCCCTCTCAAATGAGGCCAGTTTCAATGTCTCACTTGCCGGTTTTTGCTGCTTGGAGTGATACCTAG 2064 0.4767 MKSMNDGNTDDGNNHNWLGFSLSPHMKMEITSSADPPHHHHHHYYHHPQVSAAAGPCNTVPTGFYISPSHLNPSGICYGVGENSAFHPPLAMMPLKSDGSLCIMEALTRSQTQVMVPTTSPKLEDFLGGASVGAQDYGGHEREAMALSLDSVYYSSQNAEPEANRGHPSSLGLLSDPFRQQTHPYYSGLGIYQVEEEPKQPHVTVCSSQMPHAVEEGIACFKNWVPPRGYSSTQQNLEQQQGNNSSGMVEGHGASGNAGVGCGELQSLSLSMSPGSQSSCVTVPTQISSSKTESVAGDAKKRGSAKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQTELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKESEQRTEGMEYNGVSSQQQEAENVNNNEKNEKGSSSSSDWKMGLYHQQHQQQSNNNNCEMKNMKCGNYRGSGFSVSLQDLIGIDSVGSSQAMIEESTKIGAHFSNPSSLVTSLSSSREGSPDKTGPTMLFPKPPVGSKVVTSPIANGVSVGAWFPSQMRPVSMSHLPVFAAWSDT 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00436 687 SMART rav1_2 429 493 IPR001471 GO:0003700|GO:0006355
Viun8g00436 687 SMART rav1_2 327 399 IPR001471 GO:0003700|GO:0006355
Viun8g00436 687 CDD AP2 326 393 IPR001471 GO:0003700|GO:0006355
Viun8g00436 687 MobiDBLite consensus disorder prediction 230 251 - -
Viun8g00436 687 Pfam AP2 domain 430 479 IPR001471 GO:0003700|GO:0006355
Viun8g00436 687 Pfam AP2 domain 327 385 IPR001471 GO:0003700|GO:0006355
Viun8g00436 687 MobiDBLite consensus disorder prediction 507 552 - -
Viun8g00436 687 CDD AP2 428 489 IPR001471 GO:0003700|GO:0006355
Viun8g00436 687 SUPERFAMILY DNA-binding domain 326 395 IPR016177 GO:0003677
Viun8g00436 687 PRINTS Ethylene responsive element binding protein signature 328 339 IPR001471 GO:0003700|GO:0006355
Viun8g00436 687 PRINTS Ethylene responsive element binding protein signature 469 489 IPR001471 GO:0003700|GO:0006355
Viun8g00436 687 FunFam AP2-like ethylene-responsive transcription factor 428 489 - -
Viun8g00436 687 FunFam AP2-like ethylene-responsive transcription factor ANT 326 395 - -
Viun8g00436 687 MobiDBLite consensus disorder prediction 287 315 - -
Viun8g00436 687 MobiDBLite consensus disorder prediction 616 646 - -
Viun8g00436 687 ProSiteProfiles AP2/ERF domain profile. 429 487 IPR001471 GO:0003700|GO:0006355
Viun8g00436 687 MobiDBLite consensus disorder prediction 520 552 - -
Viun8g00436 687 MobiDBLite consensus disorder prediction 230 255 - -
Viun8g00436 687 MobiDBLite consensus disorder prediction 616 634 - -
Viun8g00436 687 SUPERFAMILY DNA-binding domain 428 489 IPR016177 GO:0003677
Viun8g00436 687 Gene3D AP2/ERF domain 429 489 IPR036955 GO:0003700|GO:0006355
Viun8g00436 687 Gene3D AP2/ERF domain 326 395 IPR036955 GO:0003700|GO:0006355
Viun8g00436 687 ProSiteProfiles AP2/ERF domain profile. 327 393 IPR001471 GO:0003700|GO:0006355
Viun8g00436 687 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 117 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00436 Viun-Chr8 3102321 3106896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00436 410 687 AP2-EREBP Transcription Factor Family AT4G37750 25.325 1.23e-13 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Viun8g00436 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00436 K09285 - gmx:100798179 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00436 8 3102321 3106896 Viun8g00436 8 3102321 3106896 ECH
Viun8g00436 8 3102321 3106896 Viun9g03344 9 40080314 40084254 PCT