Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00432 ATGGATCTTGGGGTGGTGGGTTTGGAGGGGTTGGTGGGTTCAGAAAGCAGTTGCGCCTTTGGTTCTTCTCTTGCTCCAGATCCTGAGACAAAACACAAGTGGTACGGATCTGGGGTGCTCAAGCAAGAGAGATCTGGCACAGGAAGTGAAGATGAGTGGAGAACTTCAAAAGTGCCTAAAACTGATGACAACATGTCTGCGCCATCCAAAGCAATGCTCTTTCACCACAGAAACTCCCTGCTGAGATCTAATGTCACCCTTTTCTCTGAGGGCCACAACCAACCACAAATGCTGAGTTTCTCTTCACCAAAATCAGAGCCTTTGATGATGGACAAGGCCTCCTTAAATGCTACATTGCCTTTTTCTTACCACCAATTGTCCACTTACAGCAGAAATACAGGTTACAGTTCGGGAAGCATAAGCATGCATGGGGCTTTGGCTGGTGTGAGAGGGCCATTCACGCCTTCACAGTGGATGGAACTTGAACACCAAGCTTTGATCTACAAGTACATCACCGCAAACGTGCCTGTACCCACTCATCTTCTCATACCCATCAGAAAAGCACTCGATTCTGCTGCCTTCTGCAACTTTTCAACCGGCCTCCTCAGACCCAACACATTGGGATGGGGAGGTTTCCATCTGGGATTCTCGAACAACACAGACCCTGAGCCAGGGAGGTGTAGGAGAACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGCCGTAGTTGATCAGAAGTATTGCGAGCGGCACATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCCTCACCACCACTACCACCACAACAACCACCACTCCTCCTCCTAATGCTTCCTCAAACTCCATCGTGGTGCCCGGCAACAATAACAACAACAACAACACCTTCGCACACACCAATGTGCACCACCCTCTTCCCTCTCATCCCTCTCCAGCCAACACCATCAATAGGATGTTTATGAGTAAAGAGAACAACAACAACGCTAGTGAGAGGATGCAGGATGCACTTCCCATGGTGCCTCCAACTCTTGAGCTGAAACCAAAGGACCCTTTCATGATTCATAAACACCAACTCCCATATGATGAATCATCCTCAAGGAACAACAATGAGTTTGGGCTTGTCACTTCTGATTCCTTGCTCAACCCTTCACAGAAGAGAAGCTTTGGTTCATCATCTTCACAAAAGGATGATTCTGAGTCCCAACAGCAACATTCTCTCAGGCACTTCATCGATGACTCTCCAAAACCACAGTCTCATCATCACCACCATCACCGTTCTTCTGTCTGGCCTGAACTTGACAACATGCAGTCAGATAGGACTCAGTTATCAATCTCCATACCAATATCTTCCTCAGATTTCATGTCATTCACTACTTCTTCACCCTCTAATGAGAAGCTCACACTGTCACCACTAAGGCTTTCAAGGGAGTTAGACCCTATTCAAATGGGGTTGGGAGTGGGAAGTGGAGCTCCCAATGAGTCAAACACTAGGCAAGCCAATTGGATTCCAATCACTTGGGAGAGTTCTATGGGTGGTCCTCTTGGTGAGGTTTTGAACCTGAGTAGCAGTAATAACAACAGCAATGGAAGTGATCACTGTGGCAAGAACACTTCTGCCCTTAATCTCATGAAAGATGGGTGGGACAGTAGTCCTCCACTAGGGTCATCTCCTAATGGGGTGTTGCAAAAAACAGCATTTGGATCACTTTCCAATAGCAGTGCTGGAAGCAGTCCAAGGGCAGAGAACAACAACATGAAAGAAGGTGCCAGTGCCACCACACTCTGCAATGCCTTGTGA 1821 0.4794 MDLGVVGLEGLVGSESSCAFGSSLAPDPETKHKWYGSGVLKQERSGTGSEDEWRTSKVPKTDDNMSAPSKAMLFHHRNSLLRSNVTLFSEGHNQPQMLSFSSPKSEPLMMDKASLNATLPFSYHQLSTYSRNTGYSSGSISMHGALAGVRGPFTPSQWMELEHQALIYKYITANVPVPTHLLIPIRKALDSAAFCNFSTGLLRPNTLGWGGFHLGFSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHALTTTTTTTTTTPPPNASSNSIVVPGNNNNNNNTFAHTNVHHPLPSHPSPANTINRMFMSKENNNNASERMQDALPMVPPTLELKPKDPFMIHKHQLPYDESSSRNNNEFGLVTSDSLLNPSQKRSFGSSSSQKDDSESQQQHSLRHFIDDSPKPQSHHHHHHRSSVWPELDNMQSDRTQLSISIPISSSDFMSFTTSSPSNEKLTLSPLRLSRELDPIQMGLGVGSGAPNESNTRQANWIPITWESSMGGPLGEVLNLSSSNNNSNGSDHCGKNTSALNLMKDGWDSSPPLGSSPNGVLQKTAFGSLSNSSAGSSPRAENNNMKEGASATTLCNAL 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00432 606 MobiDBLite consensus disorder prediction 525 606 - -
Viun8g00432 606 SMART QLQ_2 151 187 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun8g00432 606 MobiDBLite consensus disorder prediction 45 59 - -
Viun8g00432 606 Pfam WRC 222 264 IPR014977 -
Viun8g00432 606 MobiDBLite consensus disorder prediction 408 425 - -
Viun8g00432 606 MobiDBLite consensus disorder prediction 525 545 - -
Viun8g00432 606 MobiDBLite consensus disorder prediction 266 305 - -
Viun8g00432 606 MobiDBLite consensus disorder prediction 370 407 - -
Viun8g00432 606 Pfam QLQ 152 186 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun8g00432 606 ProSiteProfiles QLQ domain profile. 152 187 IPR014978 GO:0005524|GO:0005634|GO:0006355
Viun8g00432 606 MobiDBLite consensus disorder prediction 38 66 - -
Viun8g00432 606 PANTHER GROWTH-REGULATING FACTOR 5 90 467 IPR031137 GO:0005634|GO:0006351|GO:0032502
Viun8g00432 606 MobiDBLite consensus disorder prediction 366 439 - -
Viun8g00432 606 MobiDBLite consensus disorder prediction 250 305 - -
Viun8g00432 606 ProSiteProfiles WRC domain profile. 221 265 IPR014977 -
Viun8g00432 606 MobiDBLite consensus disorder prediction 559 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00432 Viun-Chr8 3027481 3031661 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00432 41 596 GRF Transcription Factor Family AT2G22840 43.576 5.50e-105 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Viun8g00432 WRC 5.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00432 - - gmx:100807610 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00432 8 3027481 3031661 Viun8g00432 8 3027481 3031661 ECH