Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00421 ATGGTGGTGCTGTCGTCGGAGGAGGATGAATTCGACGAGGAGCCCGGCGAGGTCATCGAATCGGCGCCGCCGCAGAAGGTGGGGGAAGAGAGGCAACTCAGAGGTTTCAAGAAGAAGCTTCTCAGACACGGACACGGTTGGGAGACCCCTAACTTCAACGACGTCGTAACAGTTCACCGTGTTGGAGGAACATTGGTCGACGGAACGGCGTTGGGTTCTTCCACTAGAGACACGGATCAACCCTTGACGTTTACTCTCGGCAATGGTGACGTTCCTGGGTTGGACCGTGGGATTACGAGTATGAAGAAAGGGGAGGTGGCATTGTTCACGTTACCTGCAGATGGTGAAGGTGATGTTTGGCGTGATTCCGACTCTGTTGTGCAGTTTGAGGTCGAACTCCTTTCGTGGATGAGGGTGGTGTATGTATGCAAAGATGGTGGAGTTATCAAGAAAATTGTGGAGAAGGGGAGTGGGAACGACCGCCCTTCTGATCTCGATGAAGTGCTTGTGAAGTATCAGGTGGCACTAGTTGATGGCACCGTTGTTGAAGAGACACCTGAAGGAGGAGTTGAGTTTTACGTGAAGGATGGTCATCTTTTTCCGATTTTGCCAAAAGTGATCATGACTATGACGAGGGGAGAAAAGGCCGAATTAATTGTCCAACCTCAGTATGCCTTTGGGGACACGGGAAGAGACTCTGGAAGTGGGCTCTGTCCAATCCCTCCAAATTCAGTACTGCATGCTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTTACTGGTGACTCCAAGGTGCTTAAAAAGATATTGAAAGAAGGGGAGGGTGCTTTCACAGCCGACGAGTGTGCACATGTTACTGTCAGCTTCACAGCTATGCTAGAAGATGGCACGGTATTTGAGAAAAGGAGAACTGGTGAAGAACAACCCTTGGAATTCATAACTGATGAGGAACAAGTGATTGCTGGTCTAGATCGAGCTGTGGCTACTATGAAGAAGGGTGAGAGGGCCATTATTTCCATACATCCTGAGTATGCATTTGGAAATGTTGAAGTGAGACGAGATCTTGCTATTGTTCCACCAGGCTCAAATGTAGTCTATGACGTTGAGATGATGGATTTTATCAAGGAAAAAGCACCATGGGAATTGAATAGTAAGGAGAAAATTGAGGTGGCTGGGAGGAAGAAAGAAGAAGGAAATGTACTATTTAAAGGTGGCAATTACCTCCGAGCAGAGAAGAAGTATGAACAGGCAGTTGATTTTCTTAGTGACGATGGATCCTTTGGGTTCGGTGAGCAAAAGCAAGCTGACGCACTGAGAGTGTCATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTAGTGGAGCAATCAAACTATGTTCGCAGGTGCTTGATGTTGAATTTTGCAACGTGAAAGCTTTCTACAGACGAGCACAAGCATATATAGAAACTGGAGACTTCCTATTAGCAGATTTAGACATCAAGAAAGCTCTTGTGGCGGACCCACAAAACAGGGAGGTAAAGATAATTCAAAAGAAATTGAAGCAACTTCAAGCTGACAAAGACAAAAAAGATGCGAAGCTATACGGAAACATGTTTGCGGGTAAAACAAAGGACTCGTCTATGGCTATAAAGAGACCGAAGGTTGAGAAAGACGATAGGGAAAACGAAGATGGAGCAAGAATGGAAGAGGACACAGTTGCTGATAGCGCAGTGATTTAA 1737 0.4606 MVVLSSEEDEFDEEPGEVIESAPPQKVGEERQLRGFKKKLLRHGHGWETPNFNDVVTVHRVGGTLVDGTALGSSTRDTDQPLTFTLGNGDVPGLDRGITSMKKGEVALFTLPADGEGDVWRDSDSVVQFEVELLSWMRVVYVCKDGGVIKKIVEKGSGNDRPSDLDEVLVKYQVALVDGTVVEETPEGGVEFYVKDGHLFPILPKVIMTMTRGEKAELIVQPQYAFGDTGRDSGSGLCPIPPNSVLHANIELVSFKPVINVTGDSKVLKKILKEGEGAFTADECAHVTVSFTAMLEDGTVFEKRRTGEEQPLEFITDEEQVIAGLDRAVATMKKGERAIISIHPEYAFGNVEVRRDLAIVPPGSNVVYDVEMMDFIKEKAPWELNSKEKIEVAGRKKEEGNVLFKGGNYLRAEKKYEQAVDFLSDDGSFGFGEQKQADALRVSCWLNGAACSLKLNDFSGAIKLCSQVLDVEFCNVKAFYRRAQAYIETGDFLLADLDIKKALVADPQNREVKIIQKKLKQLQADKDKKDAKLYGNMFAGKTKDSSMAIKRPKVEKDDRENEDGARMEEDTVADSAVI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00421 578 FunFam Peptidylprolyl isomerase 140 256 - -
Viun8g00421 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 284 376 IPR001179 GO:0003755
Viun8g00421 578 FunFam Peptidylprolyl isomerase 381 536 - -
Viun8g00421 578 MobiDBLite consensus disorder prediction 1 17 - -
Viun8g00421 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 53 114 IPR001179 GO:0003755
Viun8g00421 578 SUPERFAMILY TPR-like 387 538 IPR011990 GO:0005515
Viun8g00421 578 Gene3D Tetratricopeptide repeat domain 379 536 IPR011990 GO:0005515
Viun8g00421 578 MobiDBLite consensus disorder prediction 544 578 - -
Viun8g00421 578 MobiDBLite consensus disorder prediction 1 26 - -
Viun8g00421 578 FunFam Peptidylprolyl isomerase 257 378 - -
Viun8g00421 578 SUPERFAMILY FKBP-like 262 393 - -
Viun8g00421 578 SUPERFAMILY FKBP-like 13 137 - -
Viun8g00421 578 SUPERFAMILY FKBP-like 141 256 - -
Viun8g00421 578 Gene3D - 139 256 IPR046357 GO:0003755
Viun8g00421 578 SMART tpr_5 393 426 IPR019734 GO:0005515
Viun8g00421 578 SMART tpr_5 442 475 IPR019734 GO:0005515
Viun8g00421 578 SMART tpr_5 476 509 IPR019734 GO:0005515
Viun8g00421 578 ProSiteProfiles TPR repeat profile. 476 509 IPR019734 GO:0005515
Viun8g00421 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 165 256 IPR001179 GO:0003755
Viun8g00421 578 PANTHER PEPTIDYLPROLYL ISOMERASE 122 257 - -
Viun8g00421 578 Coils Coil 512 532 - -
Viun8g00421 578 Gene3D - 258 378 IPR046357 GO:0003755
Viun8g00421 578 Gene3D - 31 138 IPR046357 GO:0003755
Viun8g00421 578 MobiDBLite consensus disorder prediction 546 570 - -
Viun8g00421 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 372 IPR001179 GO:0003755
Viun8g00421 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 161 253 IPR001179 GO:0003755
Viun8g00421 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 48 114 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00421 Viun-Chr8 2890820 2897343 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00421 26 539 Calmodulin-binding Proteins AT3G25230 54.215 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00421 K09571 - gmx:100798382 902.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00421 8 2890820 2897343 Viun8g00421 8 2890820 2897343 ECH