Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00886 ATGGGAAACTCGCAAGTCAAAAAGCGTCACATTCCCTCTCCCACCGTAACCAGAAACTTGTCACCACAACTACGACCGTCATCGTCGCCGGAATCATCAAGAAAACCACCGCGAGAGCCACCACCGGAGCAACACCACGGTTCTGGAAAACTATCTGCGAAAGAGAAATACGCTCTGATTCCTGATAACTTCACTACGCTTGAACAGGTTACAACTGCCTTGAGGAACGAAGGTTTAGAATCATCAAATCTTGTTCTTGGAATTGATTTTACGAAAAGTAATGAATGGACTGGAAGTATCTCATTCAACAATAAAAGCCTACATGCTATTGGAAATACACCTAACCCGTATGAGAAAGCCATCTCTATCATTGGCAAGACTCTGGCTCCGTTTGATGATGACAACTTGATTCCTTGTTTTGGCTTTGGTGATGCCACCACTCATGATCAAGAAGTGTTTAGCTTTCACACTGATCATTCATCTTGCCATGGATTTGAGGAAGTTTTGGCTTGTTATCAAAAAGTTGTTCCAAACTTAAGACTTTCAGGAATCTTGTTGCATGGAAGAGAGACTCTCCCTCTTGAGGAAATTCAGACAACTTTGAGTTCGATAGAGTTGAACGATAAATTTGATGTTATGGTGTCTAGTGTTAGAGACGACCTTCTATTAAAGGGGAGAATATCTACAAGTGATGATATAGATGAGATAGAAGGAGATCGAAGTCAAGGTCACACAATGGTAGAGGCACATCATATATCAAATGGTTCCATCGCAAAAAGGAAGGTTCTACCAGAAGATATAGAACAAAGTGAAGGATTAGAGCTTGGGAAAAGGTATGGATTTGCAAAGTTTATTGCATATTCCTTAGTAGCTGCATGTGAGATACTAGGAGATGAGCCTCGTCTGCCCTTGCAAGCTATAGCCATGGCTGAAGAAATATCTATGTTTTTGTTTGAAGGACCAACTTCTTACGCTCCAGTGATTGAGGCTGCAATAGACATAGTTGAGCAAAGTCATGGCCAATTCCATGTGTTAGTTATTGTTGCAGATGGCCAGGTTACGACAAGCGGTGACGATGGAGAACTAAGTCCACAAGAAGCAAGAACTATCAAAGCAATAGCTGATGCAAGTTCATATCCCCTGTCTATTATTCTGGTTGGAGTTGGTGATGGACCTTGGGATGACATGAAGAAGTTCGATGACAAGATTCCGGTTCGCGACTTTGACAATTTCCAGTTTGTTAACTTCACTGACATAATGTCTAAGAAATCAAGCTCCTCTGAAAAAGAAGCTGCTTTTGCTCTGGCTGCTCTAATGGAGATACCTTTCCAATATAAAGCAGCCATTGAACTAGGACTACTAGGTCGAGTAACAGGAAGGTCAAATAAAATTGTTCCGAGACCTCCTCCAGCTCCTTATTCTAGGCTTGTGCCACCAGCTCGTGTTCTCAGCAATAATCCAACTTTCATGGATGATGAGAGAAATCAAATGGCATGTGCCATTTGTCTGACAAGTAGAAAGGATTTGGCCTTTGGATGTGGTCACATGACTTGCAGAGACTGTGGATCCAGGTTAACTAACTGTCCAATATGCCGTCAGAGGATCACCAATCGTCTGAGAGTGTTTTCTGGTTGA 1635 0.4214 MGNSQVKKRHIPSPTVTRNLSPQLRPSSSPESSRKPPREPPPEQHHGSGKLSAKEKYALIPDNFTTLEQVTTALRNEGLESSNLVLGIDFTKSNEWTGSISFNNKSLHAIGNTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDQEVFSFHTDHSSCHGFEEVLACYQKVVPNLRLSGILLHGRETLPLEEIQTTLSSIELNDKFDVMVSSVRDDLLLKGRISTSDDIDEIEGDRSQGHTMVEAHHISNGSIAKRKVLPEDIEQSEGLELGKRYGFAKFIAYSLVAACEILGDEPRLPLQAIAMAEEISMFLFEGPTSYAPVIEAAIDIVEQSHGQFHVLVIVADGQVTTSGDDGELSPQEARTIKAIADASSYPLSIILVGVGDGPWDDMKKFDDKIPVRDFDNFQFVNFTDIMSKKSSSSEKEAAFALAALMEIPFQYKAAIELGLLGRVTGRSNKIVPRPPPAPYSRLVPPARVLSNNPTFMDDERNQMACAICLTSRKDLAFGCGHMTCRDCGSRLTNCPICRQRITNRLRVFSG 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00886 544 ProSiteProfiles Zinc finger RING-type profile. 499 532 IPR001841 -
Vimu5g00886 544 MobiDBLite consensus disorder prediction 1 31 - -
Vimu5g00886 544 MobiDBLite consensus disorder prediction 1 52 - -
Vimu5g00886 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 543 IPR013083 -
Vimu5g00886 544 Pfam Copine 318 454 IPR010734 -
Vimu5g00886 544 Pfam Copine 106 183 IPR010734 -
Vimu5g00886 544 SMART ring_2 499 531 IPR001841 -
Vimu5g00886 544 SUPERFAMILY vWA-like 318 399 IPR036465 -
Vimu5g00886 544 MobiDBLite consensus disorder prediction 36 52 - -
Vimu5g00886 544 Pfam Zinc finger, C3HC4 type (RING finger) 496 536 - -
Vimu5g00886 544 SUPERFAMILY RING/U-box 494 538 - -
Vimu5g00886 544 PANTHER COPINE FAMILY PROTEIN 1 319 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00886 Vimu-Chr5 11818830 11831734 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00886 K16280 - gmx:100803177 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00886 5 11818830 11831734 Vimu5g00886 5 11818830 11831734 ECH
Vimu4g01577 4 16826372 16831854 Vimu5g00886 5 11818830 11831734 PCT