Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00872 ATGACACAACCATCAGCGCCTCCGCCTCCGCCTCCGCCGCTGGCGCCACCGCCACCGACAACTCCGCCGCCACCTCAGCAGACCGAGAGCGTCCGCGTGCGCTGCGCCGGCTGCCGAATGATCCTGACAGTGGCGCCTGGCCTCACGGAGTTCGCCTGCCCTACCTGCCGAATGCCGCAGATGCTTCCGCCGGAGCTCATGCCTAGGGAGCGCGCCGCCACAGCAAATGCGCTTACATCGGTGCCTCCGACGTCCGCTCCTCCGTCGCAGCCTCCGCACGCTCCTGCACACGGCATTGATCCCACTAAGATCCAGCTTCCCTGCGCTTCTTGTAAGGCCATCCTCAACGTCCCTCACGGCCTCGCGCGCTTCGCTTGCCCTCAGTGCAACGTTGACCTAGCCGTCGATGTCTCCAAGGTGAAGCAGTTCTTCCCCGCCGCTCCTCCGCCTGAAGAAGTTAACGAGGTTGCTGTTGAAGTGGAGCGGGACGAGGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGACCACCAAAAGTATCTATTGGATCTCCACATCCAGATCCTGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCGCCTGAGCCAACTTATGATCCAAAAATTAAAGATGATTTGGAGAGTTCTAAGACTTTGTCGTGCTTGCAAATTGAGACATTGGTCTATGCTTGTCAGAGACACCTTCAACATCTCCCAAATGGAGCTAGGGCAGGATTCTTTGTTGGAGATGGAGCTGGTGTCGGTAAAGGTCGAACAATTGCAGGGCTAATTTGGGAGAACTGGCATCATGGAAGGAGGAAAGCTTTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCTAGAAGAGACTTGGATGATGTGGGTGCAGCATGTGTTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGATCAGGGAGGGAGTTGTTTTCTTGACGTACAATAGTCTCATAGCCTCTTCTGAGAAAGGTCGTACTCGTCTCCAGCAGCTTGTACAGTGGTGTGGACCAGGGTTTGACGGTCTTATAATTTTTGACGAGTGTCATAAAGCAAAAAATCTGGTCCCTGAAGCAGGCAGTCAGCCAACTCGAACTGGAGAGGCAGTGCTTGATATCCAGGAGCGACTGCCTGAAGCTCGTGTTGTTTATTGCTCTGCAACTGGAGCTTCTGAACCTCGCAATCTGGGTTATATGGTTCGACTTGGTCTTTGGGGAGATGGGACATCCTTCTTAGATTTTCGTGAATTTCTAGGTGCTTTGGACAGAGGGGGTGTTGGAGCTCTTGAATTAGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTATGTAGGACGCTCAGCTATGAAGGTGCAGAGTTTGAAGTAATTGAAGCACCTTTAGAAGAGAAAATGATGGAAATATATAAAAAGGCAGCAGAATTTTGGGCTGAATTACGAGTAGAATTGCTGTCAGCTAGTGCCTTCCTAAATGATAAACCTAATTCTAGTCAACTATGGCGCTTATACTGGGCAAGCCATCAGCGTTTCTTTAGGCACCTATGTATGTCTGCTAAAGTCCCTGCTGCTCTGAGATTAGCAAAGGAAGCATTAGCTCAAGAAAAATGTGTAGTCATTGGTCTTCAGAGCACTGGAGAAGCAAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTGCTTAAATTTGTTGAAGAAAATTACCCTTTGCCAGAAAAACCTGAACTTCTCCCAGGAGAAGATGGGGTGAAAGAGCTCCAAAGGAAGAGGCACTCTGCAACTCCTGGTGTTTCAGTAAAAGGCAGGGTCAGAAAAGTAGCCAAGTGGCAACCTCCTAGTGATGCTGAAAGTGATGAAGAATCTGATACTGACTCTGGTGTTGAATCTACTGACTCTGATGATGAGTTTCAAATATGTGAAATTTGTACTACTGAGGAGGAAAGGAAAAAATTGCTACAGTGTTCTTGCTGCGGTAAATTAGTCCATTCCACATGCCTGATGCCACCAATTGGTGATGTAGTTCCTGAAGAGTGGTCATGCCATTTGTGTAAGGAAAAAACAGATGAATATCTCCAAGCAAGACAGGCCTACATAGCTGAACTTCAAAAGAGGTATGATGCAGCGTTGGAACGCAAGACAAAAATATCAGAGATAATTCGGTCCTTGGATCTTCCAAATAATCCTTTGGATGATATTGTTGATCAGCTAGGAGGCCCTGACAAAGTTGCAGAAATGACAGGAAGGAGAGGAATGCTTGTGAGGGCTGCTACAGGCAAGGGTGTAACTTATCAGGCTCGTAATACAAAAGACGTGACCATGGAAATGGTTAACATGCATGAAAAGCAGCTCTTTATGGATGGTAAAAAGTTAGTTGCTATTATCTCTGAGGCAGGATCTGCTGGCGTTTCATTGCAGGCCGATAGACGAGCTGCAAATCAGAAAAGAAGGGTTCATTTGACCCTGGAACTTCCATGGAGTGCTGACCGTGCAATTCAACAGTTTGGAAGAACGCATCGATCAAATCAAGCTTCTGCACCCGAGTACAGATCAGAAGATGGCCGAATCGGAGCGATCTCCCGAGGTAGCTCACTGGATCAGAGGATCATCCTCTGTGTTGATCTTCCTAGTGTGCCATCTTTATCTTCATTTGTTGTGATATTAGGGGCTGGACCTTCATTAAGTGCTTATAATTATGATAGTGCCTATGGAAAAAGGGCTCTGATGATTATGTACAAAGGAATAATGGAGCAGGATTCTCTGCCTGTGGTACCTCCGGGGTGTTCATCTGACAAACCAGATACAATTCATGATTTTATTGTGCAAGCAAAAGCTGCTCTTGTATCTGTTGGAATAGTAAGGGACACAGTCCTTGGTAACGGTAAAGATCTTGGAAGATTATCTGGTCGCATTATTGATTCGGATATGCATGAAGTTGGGCGGTTTCTCAACAGGATTTTGGGACTACCTCCTGATATTCAGAATGGGCTATTTGAGTTATTTGTTAGTATCTTGGATCTTCTTGTTCGGAATGCTCGCATTGAAGGTAACCTTGATGCCGGCATTGTTGACTTGAAAGCTAATGTAATTGAATTACAAGGGACTCCAAAGACTGTTCATGTTGATCAATTGACTGGGGCCTCAACAGTTTTGTTTACATTCATCTTAGATCGTGGGATCACATGGGAGTTGGCAACTACAATGCTGAATGAAAAGCAGAGGGATGGGCTTGGCTCCACCAATGATGGCTTTTATGAGTCCAAGAGGGAGTGGTTGGGAAGACGGCATTTCATTTTAGCATTTGAAAGTTCTGCTTCGGGTATGTATAAAATAGTTCGACCCCCTGTTGGAGAATCAAACAGGGAGATGCCTCTGTCTGAATTAAAAAGTAAATATAGAAAAATTTCGTCTTTAGAGAAGGCTCAGTCTGGTTGGGAAGAGGAATATGAAGTTTCATCCAAACAGTGTATGCATGGTCCCAATTGTAAGATTGGCAACTTTTGTACAGTTGGTAGAAGACTACAGGAAGTAAATGTCTTGGGTGGCCTCATCCTTCCTGTGTGGGGAGCCGTAGAAAAGGCCCTTTCAAAACAGGCCCGTCTAAGCCATAGGAGGTTACGCGTTGTACGCATTGAAACTACTGTGGACACCCAACGTATTGTTGGGCTTCTTGTTCCTAATGCAGCAGTGGAAACTGTGCTTCAAGATTTAGCATGGGTTCAAGAAATTGATGATTGA 3819 0.4624 MTQPSAPPPPPPPLAPPPPTTPPPPQQTESVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMPRERAATANALTSVPPTSAPPSQPPHAPAHGIDPTKIQLPCASCKAILNVPHGLARFACPQCNVDLAVDVSKVKQFFPAAPPPEEVNEVAVEVERDEDEGGMVGETFTDYRPPKVSIGSPHPDPVVETSSLSAVQPPEPTYDPKIKDDLESSKTLSCLQIETLVYACQRHLQHLPNGARAGFFVGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGAACVEVHALNKLPYSKLDSKSVGIREGVVFLTYNSLIASSEKGRTRLQQLVQWCGPGFDGLIIFDECHKAKNLVPEAGSQPTRTGEAVLDIQERLPEARVVYCSATGASEPRNLGYMVRLGLWGDGTSFLDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEEKMMEIYKKAAEFWAELRVELLSASAFLNDKPNSSQLWRLYWASHQRFFRHLCMSAKVPAALRLAKEALAQEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKVAKWQPPSDAESDEESDTDSGVESTDSDDEFQICEICTTEEERKKLLQCSCCGKLVHSTCLMPPIGDVVPEEWSCHLCKEKTDEYLQARQAYIAELQKRYDAALERKTKISEIIRSLDLPNNPLDDIVDQLGGPDKVAEMTGRRGMLVRAATGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRSEDGRIGAISRGSSLDQRIILCVDLPSVPSLSSFVVILGAGPSLSAYNYDSAYGKRALMIMYKGIMEQDSLPVVPPGCSSDKPDTIHDFIVQAKAALVSVGIVRDTVLGNGKDLGRLSGRIIDSDMHEVGRFLNRILGLPPDIQNGLFELFVSILDLLVRNARIEGNLDAGIVDLKANVIELQGTPKTVHVDQLTGASTVLFTFILDRGITWELATTMLNEKQRDGLGSTNDGFYESKREWLGRRHFILAFESSASGMYKIVRPPVGESNREMPLSELKSKYRKISSLEKAQSGWEEEYEVSSKQCMHGPNCKIGNFCTVGRRLQEVNVLGGLILPVWGAVEKALSKQARLSHRRLRVVRIETTVDTQRIVGLLVPNAAVETVLQDLAWVQEIDD 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00872 1272 MobiDBLite consensus disorder prediction 644 660 - -
Vimu5g00872 1272 ProSitePatterns Zinc finger PHD-type signature. 667 711 IPR019786 -
Vimu5g00872 1272 SMART PHD_3 666 712 IPR001965 -
Vimu5g00872 1272 MobiDBLite consensus disorder prediction 79 99 - -
Vimu5g00872 1272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 430 IPR027417 -
Vimu5g00872 1272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 650 736 IPR013083 -
Vimu5g00872 1272 SUPERFAMILY FYVE/PHD zinc finger 657 717 IPR011011 -
Vimu5g00872 1272 Gene3D - 214 416 IPR027417 -
Vimu5g00872 1272 MobiDBLite consensus disorder prediction 631 660 - -
Vimu5g00872 1272 PANTHER STRAWBERRY NOTCH-RELATED 26 1266 IPR026741 GO:0006355
Vimu5g00872 1272 MobiDBLite consensus disorder prediction 169 213 - -
Vimu5g00872 1272 MobiDBLite consensus disorder prediction 1 26 - -
Vimu5g00872 1272 ProSiteProfiles Zinc finger PHD-type profile. 664 714 IPR019787 -
Vimu5g00872 1272 Pfam C-terminal domain on Strawberry notch homologue 755 1051 IPR026937 -
Vimu5g00872 1272 Pfam P-loop containing NTP hydrolase pore-1 187 487 IPR039187 -
Vimu5g00872 1272 Coils Coil 726 746 - -
Vimu5g00872 1272 MobiDBLite consensus disorder prediction 1 30 - -
Vimu5g00872 1272 FunFam Protein strawberry notch homolog 2 218 418 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00872 5 11514338 11540718 Vimu5g00872 5 11514338 11540718 ECH