Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00869 ATGGCGAAAAAGGCAGTGTTGATCGGAATCAACTATCCGGGCACCAAGGCGGAGCTGAAAGGTTGCATAAACGACGTGTGGCGGATGCACCAGTGCCTCGTCGAGCGTTACGGCTTCTCCGAAGACAACATCACCGTGTTGATCGACACGGACAAATCGTACACAGAGCCGACGGGGAAGAACATCCGGTCGGCGTTGACCTCACTGGTCCGATCGGCGGAGCCTGGAGACGTGCTCTTCGTGCACTACAGCGGACACGGAACGCGTCTTCCTGCGGAAACGGGAGAGGATGATGACACTGGATTTGATGAATGCATTGTTCCTTGTGATATGAATCTTATCACTGATGATGATTTCAGAGAATTTGTTGAGGGGATCCCTAGTGATTGTAAGCTCACAATAGTATCAGATTCTTGCCATAGTGGTGGCCTAATTGACGGAGCTAAGGAGCAAATAGGAAATAGTACAAAGAGAGATGGGCAACATTCTGGTTCTGGCTTTGGTTTGTCCAGTTTTCTACGTCGTACTGCCGAGGATGCCATTGAGTCTCGAGGAATTCATATTCCTTCAGCATTGCGCCATCATAGACACAAGCATGATGATGAAACTGATGATAGGGAGATTGAACTTCCACATGAGCAGTATGGCCATGTAAAAAATAGGTCATTGCCACTTTCTACTGTCATAGAGATACTGAAGCAGAAAACTGGAAAAAGTGATATCGATGTTGGGAAATTGAGACTTTCACTTTACGATATTTTTGGGGAAGATGCTAGCCCTAAAGTAAAGAAGTTCATGAAGGTTATATTGAACAAACTCCAACATGGGGATGGTGGAAGTGACAAACACGGTGGAATCTTGGGGTTGGTGGGTAGTCTTGCCCAAGAGTTTCTCAAGCAAAAGCTGGATGCTAATGATAATGGATATGCAAAACCTGCCATGGAAACAGAGGTAGACAGTAAGTATGAAGCGTATGCTGGATCAACAAAGCCTCGTCTTCCAGACGGTGGAATTCTGTTGAGCGGTTGTCAGACTGATCAGACCTCTGCAGATGCAAGTCCTGCCGGTAATGCTGCCAATGCTTACGGAGCTTTCAGCAATGCAATACAGGCTATAATTGAGGAGACACGTGGTGCAGTCACAAATCAAGAACTTGTTTTGAAGGCAAGAGAGAAGCTGAAGAGAGGAGGTTTCACCCAAAGACCAGGACTCTACTGCAGTGATCACCATGTTGATGGTTCTTTCCTGTGCTGA 1254 0.4665 MAKKAVLIGINYPGTKAELKGCINDVWRMHQCLVERYGFSEDNITVLIDTDKSYTEPTGKNIRSALTSLVRSAEPGDVLFVHYSGHGTRLPAETGEDDDTGFDECIVPCDMNLITDDDFREFVEGIPSDCKLTIVSDSCHSGGLIDGAKEQIGNSTKRDGQHSGSGFGLSSFLRRTAEDAIESRGIHIPSALRHHRHKHDDETDDREIELPHEQYGHVKNRSLPLSTVIEILKQKTGKSDIDVGKLRLSLYDIFGEDASPKVKKFMKVILNKLQHGDGGSDKHGGILGLVGSLAQEFLKQKLDANDNGYAKPAMETEVDSKYEAYAGSTKPRLPDGGILLSGCQTDQTSADASPAGNAANAYGAFSNAIQAIIEETRGAVTNQELVLKAREKLKRGGFTQRPGLYCSDHHVDGSFLC 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00869 417 SUPERFAMILY Caspase-like 6 135 IPR029030 -
Vimu5g00869 417 MobiDBLite consensus disorder prediction 186 205 - -
Vimu5g00869 417 Gene3D - 1 185 - -
Vimu5g00869 417 Gene3D - 306 415 - -
Vimu5g00869 417 PANTHER METACASPASE-4 2 409 - -
Vimu5g00869 417 Pfam Caspase domain 3 408 IPR011600 GO:0004197|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00869 Vimu-Chr5 11451038 11453185 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00869 - - gmx:100527809 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00869 5 11451038 11453185 Vimu5g00869 5 11451038 11453185 ECH