Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00856 ATGACGAAAAAGGCAGTGTTGATCGGAATCAACTACCCAGGTACCAAGGCGGAGCTGAAAGGTTGCATAAACGACGTGTGGCGGATGCACCAGTGCCTCGTCGAGCGTTACGGCTTCTCCGAAGACAACATCACCGTGTTGGTCGACACGGACAGATCGTACACGCAGCCGACGGGGAAGAACATCCGGTCGGCGTTGACCTCGCTGGTCCGATCGGCGGAGCCCGGAGACGTGCTCTTTGTGCACTACAGCGGACACGGAACGCGTCTTCCTGCGGAAACGGGAGAGGATGACGACACTGGATATGATGAATGCATTGTTCCTTGTGATATGAACCTCATCACTGTATCCGGCAAAGTTGAGACCAAATTTGGTCTACCTTGGTCTGTGCAAACAGATTATGATTCAGGGAATTTGTTGAAAACTGATTCATTAGATCGTATAATTTTCCAAGATGATGATTTCAGGGAGTTTGTGGATGGAATCCCCAGAGATTGCAGGATCACAATTGTGTCTGATTCTTGCCACAGTGGTGGCCTACTTGAAGAAGCTAAGGAGCAGATAGGAGAGAGTACAAAGGGAGAGGAGGAAGAGTCTAAGTCTGGCTCTGGCTTTGGATTTTCAAATTTTCTCCATCGGACTGTGGAAGATGCCATTGAATCTCGCGGATTCCATATCCCTTCAGGTTTGCGCCATCACAGAGGCAGGGATGATGGTGATGAGGTTGAAGATAGGGATATTGATCTTCCACATGGGGACTATGGCTATGTAAAGAATAGATCTCTGCCCCTTTCAACCCTCATTGATATACTCAAGCAGAAAACTGGGAAAGAAGACATTGATGTAGGGAAACTCAGACCTACTCTTTTCGATGTCTTTGGGGAAGATTCTAGTCCCAAAGTGAAGAAGTTCATGAATGTTATTTTGAATAAACTCCAACAAGGAGGTGGTGAAGGTGGGGGTGGAATAATGGGGTTGGTGGGTGGTCTTGCCCAAGAGTTTCTCAAGCATAAGCTTGATGATGATGAGGGATACGCCAAGCCTGCACTGGAGACACGTGTGGAAAGTAAGCAGGAGGCATATGCTGGATCATCCAAACACAGCCTTCCGGCTGGTGGGATTCTGATGAGTGGATGTCAGAGCGACCAAACTTCTGCAGATGCAAGTCCTTCAGGAAACGCTGCCAGTGCTTATGGAGCTTTCAGCAATGCAATACAGGAAATAATTAAGGAGAGTGATGGTGCAATCACAAACCACGAACTTGTTCAGAGGGCACGGGAGAAGCTCAAGAGGACCGGTTTCACTCAAAAACCTGGACTCTACTGCAGTGATCACCATGTTGATGCTCCTTTTTTATCATTATATGCTGCTCTGCTATCAGATGAGCTTGTAGGAGATGAGTCTCACCAGTTGGAGTGGAGTGGAAGGAAATCATGGAAGCTTGAAGACGGAGGGGAGAATGTTGTGAGAGTGATGGTTGGAGGTTCAAAAGATCAACTAAGATAG 1506 0.4761 MTKKAVLIGINYPGTKAELKGCINDVWRMHQCLVERYGFSEDNITVLVDTDRSYTQPTGKNIRSALTSLVRSAEPGDVLFVHYSGHGTRLPAETGEDDDTGYDECIVPCDMNLITVSGKVETKFGLPWSVQTDYDSGNLLKTDSLDRIIFQDDDFREFVDGIPRDCRITIVSDSCHSGGLLEEAKEQIGESTKGEEEESKSGSGFGFSNFLHRTVEDAIESRGFHIPSGLRHHRGRDDGDEVEDRDIDLPHGDYGYVKNRSLPLSTLIDILKQKTGKEDIDVGKLRPTLFDVFGEDSSPKVKKFMNVILNKLQQGGGEGGGGIMGLVGGLAQEFLKHKLDDDEGYAKPALETRVESKQEAYAGSSKHSLPAGGILMSGCQSDQTSADASPSGNAASAYGAFSNAIQEIIKESDGAITNHELVQRAREKLKRTGFTQKPGLYCSDHHVDAPFLSLYAALLSDELVGDESHQLEWSGRKSWKLEDGGENVVRVMVGGSKDQLR 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00856 501 MobiDBLite consensus disorder prediction 373 393 - -
Vimu5g00856 501 Gene3D - 337 458 - -
Vimu5g00856 501 Gene3D - 1 210 - -
Vimu5g00856 501 MobiDBLite consensus disorder prediction 186 200 - -
Vimu5g00856 501 Pfam Caspase domain 2 446 IPR011600 GO:0004197|GO:0006508
Vimu5g00856 501 MobiDBLite consensus disorder prediction 186 205 - -
Vimu5g00856 501 MobiDBLite consensus disorder prediction 377 393 - -
Vimu5g00856 501 PANTHER METACASPASE-4 2 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00856 Vimu-Chr5 11234685 11239227 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g00856 - - gmx:100802658 665.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01576 4 16810794 16817960 Vimu5g00856 5 11234685 11239227 PCT