Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g00842 GAGAAACAGCAAAAGAGGGATTTGGATTCAGAGAAAAAGATGAAGTACGTGTTGGTGACAGGTGGGGTTGTGAGTGGACTTGGGAAAGGAGTCACTGCAAGCAGTATCGGTGTGCTCCTTCAGGCCTGTGGCTTTCGAGTTACTTCTATCAAGATTGATCCCTATCTGAACACTGATGCAGGAACAATGTCTCCTTTTGAACATGGGGAAGTGTTTGTTTTAGATGATGGCGGTGAGGTTGACCTCGATCTTGGAAACTATGAACGTTTCCTGGACCTCAAATTAACTCGTGACAATAATATTACAACTGGAAAAATTTACCAGTCTGTTATTGCAAAGGAGAGAAGAGGAGATTATCTTGGCAAGACTGTGCAGGTTGTTCCACACATTACTGATGCCATCCAAGAATGGATAGAGCGGGATATTGAGTCCATGCCATTTATTGAAGCACTTGGCCAATTTTCGTACCGTGTAGGCCCCGGAAACTTCTGTTTAGTTCATGTCAGCTTGGTTCCTGTTCTCAATGTTGTTGGTGAACAGATTGGGATTGCATTGCAGAAAACAAAGCCAACTCAGCACAGTGTCCGTCAACTGAGAGGGTTAGGGTTGACTCCAAATCTTCTTGCTTGTCGTAGTTCAAAGGAACTTGATGACAATGTCAAGGAAAAACTTTCTCAATTTTGTCATGTTCCGTCATCAAGCATACTCACTCTCTATGATGTGCCAAATATTTGGCACATTCCTTTGCTGTTAAGAGACCAGAAGGCACATGAGGCAATCTTGAAAACGTTAAACCTCCGAGGTGTTGCTACAGAGCCTAATTTTAAGGAATGGATTGCAACAACAAAAGTATATGACAAATTTAATGAATCTGTTAGAATTGCAATGGTGGGAAAATATACAAATCTTTCAGATGCATATCTTTCTGTACTGAAGGCACTTTTGCATGCTGCTGTTGCTTGCAACCGTAAGCTTGTTGTGGACTGGGTTCCTGCGGAAAATCTTGAAGATGATACCTCTAAGGAGGATCCTGATGCACATAAATCTGCTTGGGCTCTTTTGAAGGGTGCTAATGGGATTCTAGTTCCAGGAGGATTCGGTGATAGAGGTGTGCAAGGAAAAATTCTTGCTGCAAAGTACGCTCGAGAAAACAGTGTTCCATTTCTAGGCATTTGCTTGGGGATGCAAATTGCTGTCATTGAGTTTTCAAGATCTGTTCTGGGTCTTCATGATGCTAATAGCACAGAATTTGATCCCAAAACTAAAAATCCATGTGTCATATTTATGCCAGAAGGTTCAAAGACTCATATGGGGGGAACTATGCGTCTTGGTTCAAGGAGAACTTACTTTCATGTTGCTGACTGCAAATCGGCCAAGTTGTATGGCAATGTACAATTTGTTGATGAGCGACATCGGCATCGATATGAGGTTAATCCTGACTTGATATCACAACTTGAGAGTGCTGGTCTGTCTTTTGTTGGCAAAGATGAAACAGGGAAGCGCATGGAGATAGTTGAATTTCCTGGCCATCCTTTCTTCATTGGTGCTCAATTTCACCCCGAGTTTAAGTCAAGACCAGGGAAACCTTCTCCATTGTTCCTAGGTATTTTTCCAGAGTTACTTCATGTTATGGGAATCTACATCTTGGGAAGTTCCAAACTAGGGTTAATAACAGCAGCATGTGATAAGGCAGTTGTGCCAGCAAGCAAAGGGTATACCACAAAGATAACAAAAGGGATACTTGGTTCACACTCACCAATGTTGAAAGCACACAATGGAAATGGGTTCAAGTCTCCCAATAGTTCCTTAAATGGTGTATATACAAGTACAACTGCAAATGGGGTGTGTGTGGATGGTAGCTGTTAA 1866 0.4212 EKQQKRDLDSEKKMKYVLVTGGVVSGLGKGVTASSIGVLLQACGFRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDLKLTRDNNITTGKIYQSVIAKERRGDYLGKTVQVVPHITDAIQEWIERDIESMPFIEALGQFSYRVGPGNFCLVHVSLVPVLNVVGEQIGIALQKTKPTQHSVRQLRGLGLTPNLLACRSSKELDDNVKEKLSQFCHVPSSSILTLYDVPNIWHIPLLLRDQKAHEAILKTLNLRGVATEPNFKEWIATTKVYDKFNESVRIAMVGKYTNLSDAYLSVLKALLHAAVACNRKLVVDWVPAENLEDDTSKEDPDAHKSAWALLKGANGILVPGGFGDRGVQGKILAAKYARENSVPFLGICLGMQIAVIEFSRSVLGLHDANSTEFDPKTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFHVADCKSAKLYGNVQFVDERHRHRYEVNPDLISQLESAGLSFVGKDETGKRMEIVEFPGHPFFIGAQFHPEFKSRPGKPSPLFLGIFPELLHVMGIYILGSSKLGLITAACDKAVVPASKGYTTKITKGILGSHSPMLKAHNGNGFKSPNSSLNGVYTSTTANGVCVDGSC 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g00842 621 FunFam CTP synthase 11 287 - -
Vimu5g00842 621 CDD GATase1_CTP_Synthase 292 535 IPR033828 GO:0003883|GO:0006241
Vimu5g00842 621 Gene3D - 288 561 IPR029062 -
Vimu5g00842 621 Gene3D - 6 140 IPR027417 -
Vimu5g00842 621 Gene3D - 141 267 IPR027417 -
Vimu5g00842 621 PANTHER CTP SYNTHASE 140 537 IPR004468 GO:0003883|GO:0006221
Vimu5g00842 621 Pfam Glutamine amidotransferase class-I 303 536 IPR017926 -
Vimu5g00842 621 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 293 546 - -
Vimu5g00842 621 FunFam CTP synthase 289 544 - -
Vimu5g00842 621 SUPERFAMILY Class I glutamine amidotransferase-like 291 536 IPR029062 -
Vimu5g00842 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 266 IPR027417 -
Vimu5g00842 621 CDD CTPS_N 15 262 IPR017456 GO:0003883|GO:0006221
Vimu5g00842 621 Pfam CTP synthase N-terminus 15 140 IPR017456 GO:0003883|GO:0006221
Vimu5g00842 621 Pfam CTP synthase N-terminus 141 266 IPR017456 GO:0003883|GO:0006221
Vimu5g00842 621 NCBIfam CTP synthase (glutamine hydrolyzing) 13 536 IPR004468 GO:0003883|GO:0006221
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g00842 Vimu-Chr5 10907662 10913631 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00842 5 10907662 10913631 Vimu5g00842 5 10907662 10913631 ECH
Vimu4g01487 4 15583511 15585722 Vimu5g00842 5 10907662 10913631 PCT
Vimu5g00842 5 10907662 10913631 Vimu4g01551 4 16396292 16401476 PCT