Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01569 TTGAAAAAGCGGAGATATTCTAGTTTAAGTACTGTTGGCATGGCTGCTCAATTGCAAAAGTCTGCAGATGACATGAGGAAGAAGCTTCATGGTGATTCTCCAGGGGCTGAACTCAATAATTCCAATACGGTTCCCTCGAAGGGTGCAAGTTCCCCATCTGATGCAAGATCATGTGTATCATCGATAGGAGATGCTTCAGGTAGCGTTAAGGATGTTGATGTGGATCATGAGTACTTGTCCACAGATCAGGGTGTTCCTTATCCTGCTGGTGGCTATTATGGCTACTACTATCCAGGTTATGGTGGTTTCTTTGGAGAGTCTGACAACCAAGGGTACTATGTTGGTGCAGATGCCATGGATCTTCAATACCCTGTAAGTCTCTTGAGTTCAACTGTGGTTGGTCATGCTGTTGATGTTATTGCTGAGTCTCTGTGTGGACTGTGGTTGACTTGGTGCAAATCTGGTCGATTCAGGCTATGCGTCATGCAAGCAGATAATGGATCTTATGTCTATCTCGTGCCAGGATTTCAGACTGGCTACCCTTCATACTTTCCTATGGGTACAGCTGGTGTTGAAGGACAGTATAATGTCTACCACCCTGGATCCATCTTTCAACACCCAATTGGATCACCTGGTTATTTACCAGCCTCTCTATCCTATGGAGAATTACCACCATCAACATACTCATGGGATTCTTCCCTGACCACACAAGATGGGTTTCAAGGACATGGTTATAATGATCTGGCTGGTAAACCAAATGGTAGATCTAATTTTTCTTCCCAGAGTCATTCTGGTGGTGTTGTATCAAAGTCTTCACCCTCGTCTAACTCGGCAGAAGTGAAGGGTTCAACACCATTATTGGAGGCACCAGTTTCAGTCCTCCATTCACCTGTTGCCAAGTTTCCCACATACAATCAAGGAAAGAGTGGATTCCTCTATCCAAACAACTTGCTTAGTGTGAAAACCAATACAAAGGGCTGGGTTAGTACTGATAAGTTGAAAAACAGAAACAAGGTCAATGATTCACTTAATGAGCAGAATCAAGGTCCTAGAACAGCTAATGCAAAAGGTGCATTAGTGTCTGGAGGTAACTCTGTGAGAAACTTGGTCCTAGGTGGGAGTGGAAATGTTAGCAGTAAAATCAGGACAGATCAATACAACCTTCCTGATTTTCCAACCAAATACGACCATGCACTTTTCTTTGTCATCAAATCATACAGTGAAGATGATATCCACAAGAGCATCAAATACAACGTTTGGGCAAGTACTCCTAATGGAAACAAGAGGCTGGATGGTGCATATCAGGATGCACAGAAGAGAATGGAAGAGAAAGGATGCAAATGCCCTGTCTTCCTTTTCTTTTCGGTCAATGCTAGTGGTCAATTTTGTGGAGTAGCTGAGATGACTGGTCGGGTTGATTTCAACAAAAGTATGGATTTCTGGCAACAAGATAAATGGAATGGATACTTTCCTGTGAAATGGCACATTATAAAGGATGTTCCAAATCCTCAACTACGGCACATAATACTTGAGAATAATGATCACAAGCCCGTCACAAATAGTAGAGACACACAAGAGGTGAGTTTTCCCCAAGGTGTTGAAATTCTCAACATTTTCAAGAACTATGTGGCAAGAACTTCCATATTGGATGACTTTGAGTTTTACGAAAGCCGCCAGAAGGTCTTGCAGGAGAAGAAAACAAGGCAATCTATTCCCCATACCAGTATACAGCATATAGATGAATTAACCACATCACTAGGGTCAGTAGAGCTATCATCATCATCATCTGTGAAGAACATGGAGGATCCTAAGGTGGTTGAGAAAGTGAAGGACTGA 1836 0.4259 MKKRRYSSLSTVGMAAQLQKSADDMRKKLHGDSPGAELNNSNTVPSKGASSPSDARSCVSSIGDASGSVKDVDVDHEYLSTDQGVPYPAGGYYGYYYPGYGGFFGESDNQGYYVGADAMDLQYPVSLLSSTVVGHAVDVIAESLCGLWLTWCKSGRFRLCVMQADNGSYVYLVPGFQTGYPSYFPMGTAGVEGQYNVYHPGSIFQHPIGSPGYLPASLSYGELPPSTYSWDSSLTTQDGFQGHGYNDLAGKPNGRSNFSSQSHSGGVVSKSSPSSNSAEVKGSTPLLEAPVSVLHSPVAKFPTYNQGKSGFLYPNNLLSVKTNTKGWVSTDKLKNRNKVNDSLNEQNQGPRTANAKGALVSGGNSVRNLVLGGSGNVSSKIRTDQYNLPDFPTKYDHALFFVIKSYSEDDIHKSIKYNVWASTPNGNKRLDGAYQDAQKRMEEKGCKCPVFLFFSVNASGQFCGVAEMTGRVDFNKSMDFWQQDKWNGYFPVKWHIIKDVPNPQLRHIILENNDHKPVTNSRDTQEVSFPQGVEILNIFKNYVARTSILDDFEFYESRQKVLQEKKTRQSIPHTSIQHIDELTTSLGSVELSSSSSVKNMEDPKVVEKVKD 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01569 611 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 162 570 IPR045168 -
Vimu4g01569 611 CDD YTH 400 539 IPR007275 GO:0003723
Vimu4g01569 611 MobiDBLite consensus disorder prediction 590 611 - -
Vimu4g01569 611 Pfam YT521-B-like domain 400 540 IPR007275 GO:0003723
Vimu4g01569 611 FunFam YTH domain family 1, isoform CRA_a 377 554 - -
Vimu4g01569 611 Gene3D ph1033 like domains 376 554 - -
Vimu4g01569 611 MobiDBLite consensus disorder prediction 252 282 - -
Vimu4g01569 611 MobiDBLite consensus disorder prediction 340 359 - -
Vimu4g01569 611 MobiDBLite consensus disorder prediction 35 64 - -
Vimu4g01569 611 ProSiteProfiles YTH domain profile. 398 539 IPR007275 GO:0003723
Vimu4g01569 611 MobiDBLite consensus disorder prediction 1 67 - -
Vimu4g01569 611 MobiDBLite consensus disorder prediction 241 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01569 Vimu-Chr4 16681964 16685602 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01569 K20102 - gmx:100791190 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01569 4 16681964 16685602 Vimu4g01569 4 16681964 16685602 ECH