Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01551 ATGAAGTATGTGTTGGTGACTGGTGGTGTTGTGAGTGGACTTGGGAAAGGAGTCACTGCCAGCAGTATTGGCCTGATCCTCAAGGCCTGTGGTCTTAGAGTTACCTCTATCAAGATTGGTATTTTTCTCGTTCTTATTCTCCCTTGGATTCAAAGCTCTCTACCCTTCTTCCTAATTCGGGAACAGAATGCAGTTTGTATTTTTTACTATCATAAGTTTGATTGGCTTGCTGAATGGCCAACTTCGTCCGGTTCCTTGGACTACTTGAGGTTCTATTTGAATGGAAATGGTTTTGTTGAAGAAAAAGGGGACCCCTACTTGAACACTGATGCGGGAACAATGTCTCCTTTCGAGCATGGGGAGGTTTTCGTCTTAGATGATGGTGGAGAGGTTGACCTTGATCTTGGGAACTACGAACGATTTTTGGATATTAAATTAACTCGCGACAATAACATCACTACTGGAAAAATTTATCAGTCTGTTATTGAGAAGGAGAGAAGAGGAGATTATCTTGGAAAGACCGTACAGGTAGTTCCACACATAACAGATGCTATCCAAGAATGGATAGAACGTGTGGCAAAGATACCAGTTGACGGGAAAGAAGGGCCAGCTGATGTTTGTGTCATTGAATTGGGTGGAACTATAGGGGATATTGAGTCCATGCCTTTTATTGAAGCACTTGGCCAGTTTTCATACCGTGTAGGCCATGGCAACTTCTGTTTGGTTCATGTCAGCTTGGTTCCTATTCTTCATGTTGTTGGTGAACCGAAAACAAAGCCAACTCAGCACAGTGTTCGTCAACTTAGAGGATTAGGTTTGACCCCTAATCTTCTTGCTTGTCGCAGTTCGAAGGAACTTGATGATAATGTCAAGGCAAAACTTGCTCAATTTTGTCATGTGCCGCTGTCAAACATCCTTACTCTCCATGATGTTCCGAACATTTGGCATATTCCTTTGCTATTGAAAGACCAGAAGGCACATGAGGCGATCCTGAAAGCATTAAACTTGCTAGGTGTTGCAGCAGAGCCTAATTTGAAGGAGTGGACTGCAAGGACAAAAATTTATGACAGATGTGATGAAACTGTTAGAATTGCAATGGTGGGAAAATACACAGGCCTTTCAGATGCATATCTTTCTGTTCTAAAGGCACTTTTACATGCTTCTGTTGCTCGCAACCGTAAACTTAACGTAGACTGGGTTCCGGCGGGAGATCTTGAAGAAGCTACTTATAAAGAGGATCCTGAGGCATATAAAGCTGCATGGAATCTTTTAAAGGGCGCTGATGGTGTTCTAGTTCCAGGAGGTTTTGGTGATAGAGGAGTGCAAGGGAAAATTCTTGCGGCTAAGTATGCTCGAGAACATAGTGTTCCATTTCTAGGCATTTGCTTGGGGATGCAAATTGCTGTCATTGAGTATGCACGATCTGTTCTTGGTCTGCATGATGCCACTAGCACAGAATTTAATCCTGAAACCAAGACCCCTTGTGTCATATTTATGCCAGAGGGCTCAAAGACTCATATGGGGGCAACTATGCGGCTTGGTTCAAGAAGAACCTACTTTGAAGTTGCTGACAGCAAATCTGCAAAATTGTATGGCAATGTAAGCTTTATTGATGAGCGACACAGACATAGATATGAGGTTAATCCTGACATGGTAGCACAGCTAGAGACTGCTGGTCTGTCTTTTGTAGGCAAAGATGAAACTGGGAGGCGCATGGAAATAGTTGAATTGCCTAGCCATCCTTTTTATATTGGCGTTCAGTTTCACCCTGAGTTCAAATCCAGACCAGGAAAACCTTCTCCACTCTTCTCAGGACTAATTGCAGCAGCAAGTGAGCCAAGGAAGAAGGTGCCAAATGGTTACTCCAAGTTAGCTACATGTAATAGACACTCACCAAAACTGAAAGCACACCAAAGTGTAAAGGGCTTCAAAGCACCAAATGGTTCCTTGAATGGTGTATATACCAATGGCAATAGTGTGTATGTGGATGGTAGTTGTTAG 2001 0.4298 MKYVLVTGGVVSGLGKGVTASSIGLILKACGLRVTSIKIGIFLVLILPWIQSSLPFFLIREQNAVCIFYYHKFDWLAEWPTSSGSLDYLRFYLNGNGFVEEKGDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAKIPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGHGNFCLVHVSLVPILHVVGEPKTKPTQHSVRQLRGLGLTPNLLACRSSKELDDNVKAKLAQFCHVPLSNILTLHDVPNIWHIPLLLKDQKAHEAILKALNLLGVAAEPNLKEWTARTKIYDRCDETVRIAMVGKYTGLSDAYLSVLKALLHASVARNRKLNVDWVPAGDLEEATYKEDPEAYKAAWNLLKGADGVLVPGGFGDRGVQGKILAAKYAREHSVPFLGICLGMQIAVIEYARSVLGLHDATSTEFNPETKTPCVIFMPEGSKTHMGATMRLGSRRTYFEVADSKSAKLYGNVSFIDERHRHRYEVNPDMVAQLETAGLSFVGKDETGRRMEIVELPSHPFYIGVQFHPEFKSRPGKPSPLFSGLIAAASEPRKKVPNGYSKLATCNRHSPKLKAHQSVKGFKAPNGSLNGVYTNGNSVYVDGSC 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01551 666 FunFam CTP synthase 359 623 - -
Vimu4g01551 666 SUPERFAMILY Class I glutamine amidotransferase-like 361 615 IPR029062 -
Vimu4g01551 666 Gene3D - 1 356 IPR027417 -
Vimu4g01551 666 PANTHER CTP SYNTHASE 101 614 IPR004468 GO:0003883|GO:0006221
Vimu4g01551 666 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 363 616 - -
Vimu4g01551 666 NCBIfam CTP synthase (glutamine hydrolyzing) 102 609 IPR004468 GO:0003883|GO:0006221
Vimu4g01551 666 Pfam Glutamine amidotransferase class-I 373 608 IPR017926 -
Vimu4g01551 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 42 IPR027417 -
Vimu4g01551 666 FunFam CTP synthase 94 357 - -
Vimu4g01551 666 CDD CTPS_N 2 332 IPR017456 GO:0003883|GO:0006221
Vimu4g01551 666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 336 IPR027417 -
Vimu4g01551 666 Gene3D - 358 621 IPR029062 -
Vimu4g01551 666 CDD GATase1_CTP_Synthase 362 607 IPR033828 GO:0003883|GO:0006241
Vimu4g01551 666 Pfam CTP synthase N-terminus 2 42 IPR017456 GO:0003883|GO:0006221
Vimu4g01551 666 Pfam CTP synthase N-terminus 101 336 IPR017456 GO:0003883|GO:0006221
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01551 Vimu-Chr4 16396292 16401476 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01551 K01937 - gmx:100788720 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g00842 5 10907662 10913631 Vimu4g01551 4 16396292 16401476 PCT