Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01542 ATGAACAAAGGTGGAGCGGCGGGGTTAGGAGGTGGCGCCGGTGCCGGAAGCGGACCCACTGCGGCAGCAGCTTCAGCCGCAGCGCAGAAGCAGAAGACGCTGTTGCAAAAGGTCGAAGGTGATATTGCCAATATTGTTGATAACTTTAGCCACCTCGTCAACGTTGCAAGGGTAAATGACCCACCAGTTAGAAACTCACAGGAAGCTTTTATGATGGAGATGCGTTCTGCTAGGATGGTTCAGGCAGCTGATTCTCTGTTGAAGTTGGTTTCAGAGCTGAAGCAGACTGCAATATTTTCAGGATTTGCCTCTCTTAATGATCATGTAGAACAAAGAAGAATTGAATTTAATCAACTGGCCGAAAAAACAGATCATACTTTATCCAAAGTTGGGGAGGAAGCTGCTGCTAACCTAAAAGAACTTGAATCTCATTATAGTTCTTCAGCACAGAAGACCATGCAAAACCTCCAACCATAG 477 0.4612 MNKGGAAGLGGGAGAGSGPTAAAASAAAQKQKTLLQKVEGDIANIVDNFSHLVNVARVNDPPVRNSQEAFMMEMRSARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRRIEFNQLAEKTDHTLSKVGEEAAANLKELESHYSSSAQKTMQNLQP 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01542 158 Pfam Surfeit locus protein 5 subunit 22 of Mediator complex 36 135 IPR009332 GO:0003712|GO:0006357|GO:0016592
Vimu4g01542 158 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22 1 155 IPR009332 GO:0003712|GO:0006357|GO:0016592
Vimu4g01542 158 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01542 Vimu-Chr4 16301014 16303350 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01542 K15139 - gmx:100787657 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01542 4 16301014 16303350 Vimu4g01542 4 16301014 16303350 ECH